Streptococcus suis TL13 (serotype 16): TL13_0008
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Entry
TL13_0008 CDS
T02672
Symbol
trcF
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssut
Streptococcus suis TL13 (serotype 16)
Pathway
ssut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TL13_0008 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssut03400
]
TL13_0008 (trcF)
Enzymes [BR:
ssut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TL13_0008 (trcF)
DNA repair and recombination proteins [BR:
ssut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TL13_0008 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGL46995
LinkDB
All DBs
Position
6239..9733
Genome browser
AA seq
1164 aa
AA seq
DB search
MNILDLLHKNKQINQWQLGLNKSTRQLLLGLSGTSKSLVMATAYDSLAEKIMIVTATQNE
AEKLVADLTAIIGNEHVYNFFTDDSPIAEFVFASKERTQSRIDSLNFLTDSTSSGILVAS
MAACRVLLPSPETYKGSKIQLEVSQETEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDIL
DIFDMQAETPNRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQ
YIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIYEQSWTLLDYLPKSSPLFL
DDFHKIADKQAQFEKEIADLLTDDLQKGKTVSSLKYFASTYAELRKYKPATFFSSFQKGL
GNVKFDALYQFTQHPMQEFFHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKNLQEY
DIHLPVHAADKLVEGQQQVTIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNA
ERIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSDRISIPVEQIDL
LSKYLASDGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDE
NQIEFDNYFTHVETDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVND
GKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILI
GTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSML
GIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSE
LKELVPGATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQ
DLSIRGAGNILGAAQSGFIDSVGYEMYSQLLEQAILEKQGKASQRQKSNTEVNLQIDAYL
PSDYIGDQRQKIEIYKRIKNIDSRVNYQELQEELIDRFGEYTDVVAYLLEIGLLKSFLDQ
VFCHTVLRRQHQVTVTFEPMAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKK
EYEILEELISFAEKLKEIKARKAE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatatactcgatttacttcataagaacaagcaaatcaatcaatggcagttagggttg
aataaatcaactcgtcagttacttttaggattatccggaactagtaagtcattggtaatg
gcgacagcctatgatagtctggctgagaaaataatgattgtgactgctactcaaaatgaa
gcagagaaattagttgcagatttaacagccattattggaaatgagcacgtttacaacttc
tttacagatgatagtccaattgcggaatttgtctttgcatcaaaagaacggactcaatca
aggattgacagtttaaatttcttgacagattctaccagttcgggaattttagttgctagt
atggctgcttgtcgggtcttattgccgagtcctgagacttataaaggttctaaaatacag
cttgaagttagtcaagaaacagaagttgacaaacttgtaaagaatcttgtcaacatcggc
tacaaaaaagtgtctcgtgtattaacccagggagaatttagccaacgaggtgatattcta
gatatttttgacatgcaagcagaaactcctaaccgaatagaattttttggagatgagatt
gatggcattcgtatctttgatgttgacagtcaaaaatccttagaaaatctagacgaaatc
tcgatctctccagcttccgatatcattttgtcttcggaagactatagtagagctagccaa
tacattcagacagctattgaacaatcgaccctagaggagcaacagtcttacttacgagaa
gtcttagctgatatgcagacggagtaccggcatccagatttgcgtaaattcttgtcctgt
atctatgaacaatcatggacattgttggattacttgccaaagagttctcccttatttttg
gatgattttcataaaattgctgataagcaggctcaatttgaaaaagaaattgcagacttg
ttgacagatgatttacagaagggtaaaacagtgtcaagtttgaaatattttgcctcaact
tacgctgaattgagaaaatacaaacctgccaccttcttttcaagttttcaaaaaggttta
ggcaatgtaaagtttgatgctctttatcaattcacacagcatcctatgcaggaatttttc
caccagattccactgttaaaagatgaattgactcggtatgcgaaatcaaacaataccgtt
gttattcaagcgagttctgatgtaagtttacagactttacagaaaaatttacaagagtat
gatatccatcttccagtacatgcagcagataagttagtagaaggtcagcaacaggttacg
attggtcagttagcttcaggttttcatttgatggatgagaaactagttttcatcactgaa
aaagagattttcaataagaaaatgaagcgtaagacacgtagaaccaatatttctaacgct
gaacgtattaaggactatagtgaattagcagttggtgactatgttgttcaccatgttcat
ggtatcggtcaatacctaggaattgagactattgaaatttcaggcattcatcgtgattat
ttaacggttcaatatcaaaactccgatcgcatttctattcctgtagaacaaattgatctt
ctctccaaatacttagcgtccgatgggaaagctccaaaagttaataaactaaacgatggc
cggttccaacgaaccaagcaaaaagttcagaagcaagtggaggatattgcagatgatttg
attaagctttatgcggagcgtagtcagctgaaaggctttgccttttcaccagatgatgag
aatcagattgagtttgacaactactttacacatgtggaaaccgacgaccaacttcgttcc
attgatgaaatcaaacaagatatggaaaaagactctccaatggatcgtttgctggtagga
gatgtcggctttggtaagacagaggtagctatgcgcgctgctttcaaagcagtcaatgat
ggcaagcaagtagctattcttgttcctacgactgttttagcccagcaacactatgctaat
ttccaagaacggtttgcagaatttcctgttaatgttgatgttatgagtcgttttaaaaca
aaggcagagcaggaaaaaacacttgagaagttgaaaaaagggcaagttgacatcttgatt
ggtacccatcgccttctatcaaaagatgttgtttttgctgatttaggtttactggttatt
gacgaagagcaacggtttggtgtcaagcataaggaacgcttgaaggaactgaaaaagaaa
atagatgtcctaaccttgactgcaactccgattcctcggacattgcaaatgtccatgctg
ggaatccgcgacttatcagtaattgagactccaccgacaaatcgctatcctgtacaaact
tatgtgatggaaacaaatccttccgttatccgagatgcaatgcttcgagagatagatcgc
ggaggtcaggtttactatctttacaataaagttgacaccattgaacagaaagtgtctgaa
ttaaaagaattggttccaggagctactataggatacgtccatggacaaatgtcggagatc
caattagaaaatactctctatgcctttgtagagggtgagtatgatattctagtgaccaca
acaatcattgaaacaggtgttgatattccaaatgctaatacactatttattgaaaatgca
gaccacatgggactgtcaactctttatcaacttagaggacgtgttggccgttccagtcgg
attgcctatgcctatctcatgtaccgtccagataagtccttgacagaagtagctgaaaaa
cgcttggaagccattaagggctttacagaactaggatcaggtttcaagattgccatgcaa
gatttgtccattcgtggtgcgggaaatattttaggtgctgctcagtcaggttttattgat
tctgtgggatatgagatgtattcacaattgctggaacaagccatcttggaaaaacaaggc
aaggcgtctcagcgtcagaaaagcaacactgaggtcaatttacagattgatgcctattta
ccaagtgattatattggtgatcagcgacaaaaaattgaaatttacaagcgtataaagaat
attgacagtcgtgtcaactatcaagaattacaggaagaattgattgaccgttttggagag
tatactgatgtagtagcctacttacttgaaatcggtctattgaagtcatttttagaccaa
gttttctgtcatacagttcttagacgacaacatcaagtgacagtaacattcgaacctatg
gctggtcaaattttcctaacgcaagattactttgaagctttatctgtgacaaatttgaaa
gctcagataacggaaaataaaggaaaactagctgttgtgtttaacattcaacagaaaaaa
gaatatgaaatattagaggaattgatttcttttgccgaaaaattaaaagaaattaaagca
aggaaggcagaataa
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