Streptococcus suis TL13 (serotype 16): TL13_0152
Help
Entry
TL13_0152 CDS
T02672
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssut
Streptococcus suis TL13 (serotype 16)
Pathway
ssut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TL13_0152 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssut03021
]
TL13_0152 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssut03400
]
TL13_0152 (rpoC)
Enzymes [BR:
ssut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TL13_0152 (rpoC)
Transcription machinery [BR:
ssut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TL13_0152 (rpoC)
DNA repair and recombination proteins [BR:
ssut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TL13_0152 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGL47103
LinkDB
All DBs
Position
121301..124921
Genome browser
AA seq
1206 aa
AA seq
DB search
MQITLASPSKVRSWSYGEVKKPETINYRTLKPERDGLFDEVIFGPTKDWECSCGKYKRIR
YKGITCDRCGVEVTRAKVRRERMGHIELKAPISHIWYFKGIPSRMGLTLDMSPRALEEVI
YFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGYGSFVAKMGAEAIQDLLKQVDLPKEI
AALKEELKTASGQKRIKAVRRLDVLDAFYKSGNKPEWMILNILPVIPPDLRPMVQLDGGR
FAASDLNELYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNGRRGRPITGP
GSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPREMAIELFKP
FVMREIVARDIAGNVKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLHRLGIQAFEP
VLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHILNPKDGKPV
VTPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGIATDSLDKPW
KDNQKHKVMMTTVGKILFNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGSDIKAAIAEL
PINPPFKKKNLGNIIAEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGIADIPVIDNK
AEIIEESHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMM
MDSGARGNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGARKGMTD
TALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLEERLQGRYTK
KTVKHPETGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCRHCYGINLAT
GDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEIFEARNPKGE
AVITEVKGEVIAIEEDASTRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQVARGAALTEG
SIQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKVRVMDPGDTD
LLMGTLMDITDFTDANAEVVIAGGIPATARPVLMGITKASLETNSFLSAASFQETTRVLT
DAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAINEVEIIEDTVAEELAAEAE
LEAVTE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgttagcttcaccaagtaaggttcgttcatggtcttacggtgaggttaag
aaacctgaaacaatcaactatcggacacttaaaccagaacgtgatggactttttgacgaa
gtcatctttggtccaacaaaagactgggagtgttcatgtggtaaatacaagcgtatccgt
tataaagggattacttgtgaccgctgtggtgttgaagtgactcgtgcaaaagtacgtcgt
gaacgtatgggacacattgagttgaaagcaccaatttcacatatttggtatttcaaaggt
attccaagtcgtatgggcttgaccttggatatgagcccacgtgccttggaagaagttatc
tacttcgcggcttacgtggtgatcgatccgaaagatacaccgcttgagcacaagtcaatc
atgactgagcgcgaataccgtgagcgtttgcgtgaatatggctatggttcattcgttgcc
aaaatgggtgcagaagcgatccaagacctcttgaaacaagtcgatcttccaaaagaaatc
gcagctttaaaagaagaattgaaaacagcttctggtcaaaaacgcattaaagcagttcgt
cgcttggatgtattggatgcattctacaaatctggtaacaagcctgaatggatgattctc
aacatccttcctgttattccaccagatttgcgtccgatggttcagttggatggtggccgt
tttgccgcatctgacttgaacgaactctaccgtcgtgttatcaaccgtaacaaccgtttg
gctcgtctcttggaacttaacgctccaggtatcatcgtacaaaacgaaaaacggatgctt
caagaagctgtggatgctttgattgacaacggtcgccgtggtcgtccaatcactggacca
ggtagccgtccgcttaaatcactcagccacatgcttaaaggtaagcaaggacgtttccgt
caaaacttgcttggtaagcgtgttgacttctcaggacgttccgttatcgccgttggtcca
acgcttaaaatgtatcaatgtggtgtgccacgcgaaatggctatcgagctcttcaaaccg
tttgtcatgcgtgaaattgttgcccgtgatattgctggtaacgtaaaagctgcaaaacgt
ttgattgaacgcggggatgatcgtatctgggatatcttggaagaagtgattaaagaacac
ccagttcttttgaaccgcgcccctacccttcaccgtttgggtatccaggcttttgagcca
gttctgattgacggtaaagcccttcgtttgcacccgcttgtctgtgaagcttacaacgcc
gacttcgacggtgaccagatggcgattcacgttccattgtcagaagaagcacaagcagaa
gcacgtatccttatgcttgcggcagaacacatccttaaccctaaagatggtaaaccagtc
gtaacaccatctcaggatatggttttgggtaactactacttgaccatggaagatgctggt
cgtgaaggtgaaggtatggtcttcaaggatgcggatgaggctgttatggcttaccgcaat
ggctacgttcacttgcatacccgtgttggtattgcaacagatagccttgataaaccttgg
aaagacaaccaaaaacacaaggtcatgatgacaactgtcggaaaaatcttgttcaacgcg
attatgccagaaggccttccatacttgcaagagccaaacaatgctaacttgacagaagga
actcctgataaatacttcttggaaccaggatcagatatcaaggctgccattgcagaattg
ccaattaacccaccattcaagaagaaaaatcttggtaacatcatcgctgaaatcttcaag
cgtttccgtacaactgaaacatcagcccttcttgaccgtttgaaagacttgggttactat
cactcaacacttgctggtttgacagtgggtattgccgatatcccagttatcgacaacaag
gctgaaatcattgaagaatctcacgaacgtgtagaacaaatcaagaaacaattccgtcgt
ggtatgattactgacgatgagcgttatgcagctgttacagatgaatggcgttcagctaag
gaaaaattggaaaaacgcctggttgaaaaacaagatcctaagaacccaatcgttatgatg
atggactctggtgcccgtggtaacatctccaacttctcccagttggccggtatgcgtggt
ctgatgtcagctccgaacggacgtatcatggaattgccaatcttgtctaacttccgtgaa
ggtctttcggtattggaaatgttcttctccactcacggtgcccgtaagggtatgacggat
acggccttgaagacagccgactcaggttacttgactcgtcgtttggttgacgttgcccaa
gacgttattatccgtgaagatgactgtggaacagaccgtggtcttgacatccgttcaatc
acagatggcaaggaaatgatcgagccacttgaagagcgtttgcaaggtcgttacactaag
aaaactgttaaacatcctgaaacgggtgccgttatcattggtccaaaccaattgattact
gaagatattgcccgtgaaatcgtcaatgcaggtgttgaacaagtaaccatccgtagcgta
tttacatgtaacactcgtcacggtgtctgccgtcattgttatggtatcaacttggcgaca
ggtgatgcggttgaagtgggtgaagcagttggtacaatcgctgcccaatcgatcggtgag
cctggtacacagcttacaatgcgtaccttccacacgggtggtgtagcctcaaacagcgat
attacgcagggtcttcctcgtgtccaagagatctttgaagcccgtaatccgaaaggggaa
gcggttatcactgaggttaaaggtgaagttatcgctattgaagaagatgcttctactcgt
accaagaaagtctttgttaaaggtaaaactggcgaaggcgaatatgtggttccatttaca
gctcgtatgaaggttgaagttggtgaccaagtcgcgcgtggagcagcccttaccgaaggt
tctatccaaccaaaacgcttgcttgaagtccgtgatgtcttggcggttgaaacttacctt
ctttctgaagttcaaaaagtttaccgtagccagggtgtagaaatcggcgacaagcacatc
gaggtaatggttcgtcaaatgcttcgtaaagttcgtgtcatggatccaggtgatacagat
cttctcatgggtaccctcatggatattaccgactttacagatgccaatgcggaagtggtt
attgcaggtggtattccggcaacagctcgtccagttcttatgggtatcacgaaggcttcc
cttgaaaccaactcattcttgtctgccgcatccttccaagaaacaactcgcgttcttaca
gatgcagctattcgtggtaaacgtgacaaccttctcggtcttaaagagaacgttatcatc
ggtaagattatcccagcaggtacaggtatggcccgctaccgtaatcttgaaccacaagcc
atcaatgaagttgaaatcattgaagacacagtagcagaagagcttgctgcagaagcagag
cttgaagctgtaactgaataa
DBGET
integrated database retrieval system
