Streptococcus suivaginalis: PXH68_00620
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Entry
PXH68_00620 CDS
T10940
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssuv Streptococcus suivaginalis
Pathway
ssuv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssuv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PXH68_00620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssuv03021
]
PXH68_00620 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssuv03400
]
PXH68_00620 (rpoC)
Enzymes [BR:
ssuv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PXH68_00620 (rpoC)
Transcription machinery [BR:
ssuv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PXH68_00620 (rpoC)
DNA repair and recombination proteins [BR:
ssuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PXH68_00620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WNY47240
UniProt:
A0AA97A0X7
LinkDB
All DBs
Position
95088..98723
Genome browser
AA seq
1211 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPERDGLFDEVIFGPTKDWEC
SCGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPISHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLREYGHGSFVAKMGAEAIQDLL
KQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFYKSGNKPEWMILNILPVIPPDLR
PMVQLDGGRFAASDLNELYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMVFKDADEAVMAYRNGYVHLHTRVGI
ATDSLDKPWKDNQKHKVMMTTVGKIFFNAIMPEGLPYLQEPNNANLTEGTPDKYFLEPGS
DIKAAIAELPINPPFKKKNLGNIIAEIFKRFRTTETSALLDRLKDLGYYHSTLAGLTVGI
ADIPVIDNKAEIIEESHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQ
DPKNPIVMMMDSGARGNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDIRSITDGKEMIEPLE
ERLQGRYSKKTVKHPETGAVIIGPNQLITEDIAREIVNAGVEQVTIRSVFTCNTRHGVCR
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNSDITQGLPRVQEI
FEARNPKGEAVITEVKGEVTAIEEDAATRTKKVFVKGKTGEGEYVVPFTARMKVEVGDQV
ARGAALTEGSIQPKRLLEVRDVLAVETYLLSEVQKVYRSQGVEIGDKHIEVMVRQMLRKV
RVMDPGDTDLLMGTLMDITDFTDANADVVIAGGIPATARPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMARYRNLEPQAVNEVEIIEDTV
AQELAEEMVTE
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgatttaaaagtatgcaaatcacgttagcttcaccaagcaaagtc
cgttcatggtcttatggtgaggttaaaaaacctgaaacaatcaactaccgtacactcaag
ccagagcgcgatggactctttgacgaagtcatctttggtccaactaaagactgggagtgt
tcgtgtggaaaatacaagcgaatccgttacaaaggtatcgtttgtgaccgctgtggtgtt
gaagtgactcgtgccaaagtccgtcgtgaacgtatgggacacattgagttgaaagcacca
atttcacatatctggtattttaaaggaattccaagccgtatgggcttgaccttggatatg
agcccacgtgccttggaagaagttatctacttcgcagcttacgtggtgatcgatccgaaa
gatacaccgcttgagcacaaatctatcatgacagagcgcgaataccgtgagcgtttgcgt
gaatacggtcatggttccttcgttgccaaaatgggtgctgaggccatccaagacctcttg
aaacaggttgatcttccaaaagaaattgcagccttgaaagaagaattgaaaacagcttct
ggtcaaaaacgcattaaagcagttcgccgcttggatgtattggatgccttctacaaatct
ggtaacaagcctgagtggatgattctcaatatccttccagttattccaccagatttgcgt
ccgatggtgcagttggacggtggccgttttgccgcatctgacttgaacgaactctaccgc
cgtgttatcaaccgtaacaaccgtttggctcgcctcttggaactcaatgctccaggtatc
atcgtgcaaaacgaaaaacggatgctccaagaagctgtggatgctttgattgacaatggt
cgtcgtggtcgtccaattacaggaccaggtagccgtccgcttaaatcactcagccacatg
cttaaaggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgacttctca
ggacgttccgttatcgccgttggtccaacgctgaaaatgtaccaatgtggtgtgccacgt
gaaatggcaatcgagctcttcaaaccgtttgttatgcgcgaaatcgttgcccgtgatatt
gctggtaacgtcaaagccgcgaaacgtttgattgaacgtggtgatgatcgtatctgggat
atcttggaagaagtgatcaaagaacacccagttcttttgaaccgcgcacctacccttcac
cgtttgggtatccaggcttttgagccagttctgatcgacggtaaagcccttcgtttgcac
ccgcttgtctgtgaagcctacaacgccgacttcgacggtgaccagatggcgattcacgtt
ccattgtcagaagaagcacaagcagaagcacgtatccttatgcttgcagcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaacaccatctcaggatatggttttggggaac
tactacttgaccatggaagatgctggtcgtgaaggtgaaggtatggtcttcaaggatgcg
gatgaagctgttatggcttaccgcaacggctatgttcacttgcatacccgtgttggtatc
gcaacagatagcctagacaagccttggaaagacaaccaaaaacacaaggtcatgatgaca
actgttggtaaaatcttcttcaacgcgattatgcctgagggccttccatacttgcaagag
ccaaacaatgccaacttgacagagggaacacctgataaatacttcttggaaccaggttca
gatatcaaggctgctatcgcagaattaccaatcaacccaccattcaagaagaaaaatctt
ggaaacatcatcgctgaaatcttcaagcgtttccgtacaactgaaacctcagccctgctt
gaccgtttgaaagacttgggttactatcactcaacacttgctggtttgacagtgggtatt
gccgatatcccagttatcgacaacaaggctgaaatcattgaagaatctcacgaacgtgtg
gaacaaatcaagaaacaattccgtcgtggtatgattaccgacgatgagcgttatgcagct
gttacagatgaatggcgttcggctaaggaaaaattggaaaaacgtctggttgaaaaacaa
gatccgaagaacccaatcgttatgatgatggactctggtgcccgtggtaacatttccaac
ttctcccagttggccggtatgcgtggtctgatgtcagctccgaacggacgtatcatggaa
ttgcctatcttgtctaacttccgtgaaggtctttctgtattggaaatgttcttctcaact
cacggtgcccgtaagggtatgacggatacggccttgaagacagccgattcaggttacttg
actcgtcgtttggttgacgttgcccaagatgtcatcattcgtgaagatgactgtggaaca
gaccgtggtcttgacatccgttcaatcacagatggcaaggaaatgatcgagccacttgaa
gagcgtttacaaggtcgttacagcaagaaaactgttaaacaccctgaaactggtgccgtt
atcattggtccaaaccaattgattaccgaagacattgctcgtgaaattgtcaatgcaggt
gtggaacaagtcactatccgtagcgtatttacatgtaacacccgtcacggtgtctgccgt
cattgttatggtatcaacttggcaacaggtgatgcggttgaagtgggtgaagcagttggt
acaatcgctgcccaatcgatcggtgagcctggtacacagcttacaatgcgtaccttccac
acgggtggtgtagcctcaaacagcgatatcacgcagggtcttcctcgtgtccaagagatc
tttgaagcccgcaatccgaaaggggaagcggttatcactgaggtcaaaggtgaagttaca
gccatcgaagaagatgcagcaactcgtaccaagaaagtctttgttaaaggtaaaactggc
gaaggcgaatatgtggttccatttacagcccgtatgaaggttgaagttggtgaccaagtt
gcacgtggagcagctcttaccgaaggttctatccaaccaaaacgcttgcttgaagtccgt
gatgtcttggcggttgaaacttaccttctttctgaagttcaaaaagtttaccgtagccag
ggtgtagaaatcggcgacaagcacatcgaggtaatggttcgtcaaatgcttcgtaaagtt
cgtgtcatggatccaggcgacacagatcttctcatgggtaccctcatggatatcactgac
tttacagatgccaatgctgacgtggttattgctggtggcattcctgcaacagctcgtcca
gtcctaatgggtatcactaaggcttcccttgaaaccaactcattcttgtctgccgcatcc
ttccaagaaacaactcgtgtccttacagatgctgctattcgtggtaaacgagataacctt
ctcggtctgaaagagaacgttattatcggtaagattatcccagcaggtactggtatggcc
cgctaccgtaatcttgaaccacaagcagtcaatgaagttgaaatcattgaagacacagta
gcacaagaacttgccgaagaaatggtaacagaataa
DBGET
integrated database retrieval system
