Streptococcus suis YB51 (serotype 3): YB51_0040
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Entry
YB51_0040 CDS
T03173
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssuy
Streptococcus suis YB51 (serotype 3)
Pathway
ssuy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YB51_0040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssuy03400
]
YB51_0040
Enzymes [BR:
ssuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YB51_0040
DNA repair and recombination proteins [BR:
ssuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YB51_0040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
AAA_22
nSTAND_NTPase5
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGW86380
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All DBs
Position
6413..9907
Genome browser
AA seq
1164 aa
AA seq
DB search
MNILDLLHKNKQINQWQSGLNKSTRQLLLGLTGTSKSLVMATAYDSMAEKIMIVTATQND
AEKLVADLVAIIGSENVYNFFTDDSPIAEFVFASKERTQSRIDSLNFLTDSTSSGILVAS
MAACRVLLPSPETYKGSKIKLEVGQEIEVDKLVNNLVNIGYKKVSRVLTQGEFSQRGDIL
DIFDMQAETPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQ
YIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIYEQSWTLLDYLPKSSPLFL
DDFHKISDKQAQFEKEIADLLTDDLQKGKTVSSLKYFASTYAELRKYKPATFFSSFQKGL
GNVKFDALYQFTQHPMQEFFHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKTLQEY
DIHLPVHAADKLVEGQQQVTIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNA
ERIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNFDRISIPVEQIDL
LSKYLASDGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDE
NQIEFDNYFTHVETDDQLRSIDEIKQDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVND
GKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILI
GTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSML
GIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSE
LKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQ
DLSIRGAGNILGAAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYL
PSDYIGDQRQKIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQ
VFCHTVLRRQHQVTVTFEPMACQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKK
EYEILEELISFAEKLKEIKARKAE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatatactcgatttacttcacaagaacaagcaaatcaatcagtggcagtctggctta
aacaagtcaactcgccaactattattaggactcactggaaccagtaagtcattagtcatg
gcgactgcctatgatagtatggctgagaaaataatgattgtgactgctactcaaaatgat
gctgagaaattagttgcagatttagtagccattattggaagtgagaatgtttacaacttt
tttacagatgatagtcctattgccgagtttgtttttgcatcaaaagaacggactcaatca
aggattgacagtttaaatttcttgacagattctactagttcaggaattttagttgctagt
atggctgcttgtcgggtcttattgccaagtcctgagacttataaaggttctaaaataaag
cttgaagttggtcaagaaatagaagttgacaaacttgtaaataatcttgtcaacatcggc
tacaaaaaagtgtctcgtgtattaacccagggagaatttagccaacgaggtgatattcta
gatatttttgacatgcaagcagaaactccttaccgaatagaattttttggagatgagatt
gatggcattcgtatttttgatgttgacagtcaaaaatccttagaaaatctagacgaaatc
tcgatctctccagcttccgatatcattttgtcttcggaagactatagtagagctagccaa
tacattcagacagctattgaacaatcgaccctagaggagcaacagtcttacctacgagaa
gtcttagctgatatgcagacggagtaccggcatccagatttgcgtaaattcttgtcctgt
atctatgaacaatcatggacattgttggattacttgccaaagagttctcccttatttttg
gatgattttcataaaatctctgataagcaggctcaatttgaaaaagaaattgcagacttg
ttgacagatgatttacagaagggtaaaacagtgtcaagtttgaaatattttgcctcaact
tacgctgaattgagaaaatacaaacctgccaccttcttttcaagttttcaaaaaggttta
ggcaatgtaaagtttgatgctctttatcaatttacacagcatcctatgcaggaatttttc
caccagattccactgttaaaagatgaattgactcggtatgcgaaatcaaacaataccgtt
gttattcaagcgagttctgatgtgagtttacagactttacagaaaactttacaagagtat
gatattcatcttccagtacatgcagcagataagttagtagaaggtcagcaacaggttacg
attggtcagttagcttcaggttttcatttgatggatgagaaactagttttcatcactgaa
aaagagattttcaataagaaaatgaagcgtaagacacgtagaaccaatatttctaacgct
gaacgtattaaggactatagtgaattagcagttggtgactatgttgttcaccatgttcat
ggtatcggtcaatacctaggaattgagactattgaaatttcaggcattcatcgtgattat
ttaacggttcaatatcaaaacttcgatcgcatttctattcctgtagaacaaattgatctt
ctctccaaatacttagcgtccgatgggaaagctccaaaagttaataaactaaacgatggc
cggttccaacgaactaagcaaaaagttcagaagcaagtggaggatattgcagatgatttg
attaagctttatgcggagcggagtcagctgaaaggctttgccttttcaccagatgatgag
aatcagattgagtttgacaactactttacacatgtggaaaccgacgaccaacttcgttcc
attgatgaaatcaaacaagatatggaaaaagactctccaatggatcgtttgctggtagga
gatgtcggctttggtaagacagaggtagctatgcgcgctgctttcaaagcagtcaatgat
ggcaagcaagtagctattcttgttcctacgactgttttagcccagcaacactatgctaat
ttccaggaacgatttgcggaatttcctgtcaatgtggatgttatgagtcgttttaaaaca
aaggcagagcaggaaaaaacacttgagaagttgaaaaaaggccaagttgacatcttgatt
ggtacccatcgccttctatcaaaagatgttgtttttgctgatttaggtttactggttatt
gacgaagagcaacggtttggtgtcaagcataaggaacgcttgaaggaattgaaaaagaaa
atagatgtcctaaccttgactgcaactccgattcctcggacattgcaaatgtccatgctg
ggaatccgcgatttatcagtaattgagactccaccgacaaatcgctatcctgtacaaact
tatgtgatggaaacaaatccttccgttatccgagatgcaatgcttcgtgagatagatcgc
ggaggtcaggtttactatctttacaataaagttgacaccattgaacagaaagtgtctgaa
ttaaaagaattggttccagaagctactataggatacgtccatggacaaatgtcggagatc
caattagaaaatactctctatgcttttgtagagggtgaatatgatattctagtgaccaca
acaatcatcgaaacaggtgttgatattccaaatgctaatacactgtttattgaaaatgca
gatcatatgggactgtcaactctttatcaacttagaggacgtgttggccgttccagtcgg
attgcctatgcctatctcatgtaccgtccagacaagtccttgacagaagtagctgaaaaa
cgtttggaggcaatcaagggctttacagaactaggatcaggtttcaagattgccatgcaa
gatttgtccattcgtggtgcgggaaatattttaggtgctgctcagtcaggttttattgat
tctgtgggatatgagatgtattcacaattgctggaacaagccatcttggaaaaacaaggt
aaggcaactcaacgtcagaagagtaattcagaggtcaatttacagattgatgcctatcta
ccaagtgattatattggtgaccagcgacaaaaaattgaaatttacaagcgtataaagaat
attgacagtcgtgtcaactatcaagaattacaggaagaattgattgaccgttttggagag
tatcctgatgtagtagcctacttgcttgaaatcggtctattgaagtcatttttagaccaa
gttttctgtcatacagttcttagacgacaacatcaagtgacagtaacattcgaacctatg
gcttgtcaaattttcctaacgcaagattactttgaagctttatctgtgacaaatttgaaa
gctcagataacggaaaataaaggaaaactagctgttgtgtttaacattcaacagaaaaaa
gaatatgaaatattagaggaattgatttcttttgccgaaaaattaaaagaaattaaagca
aggaaggcagaataa
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