Streptococcus suis YB51 (serotype 3): YB51_6975
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Entry
YB51_6975 CDS
T03173
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssuy
Streptococcus suis YB51 (serotype 3)
Pathway
ssuy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssuy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YB51_6975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssuy03019
]
YB51_6975
03009 Ribosome biogenesis [BR:
ssuy03009
]
YB51_6975
Enzymes [BR:
ssuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YB51_6975
Messenger RNA biogenesis [BR:
ssuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YB51_6975
Ribosome biogenesis [BR:
ssuy03009
]
Prokaryotic type
rRNA helicases
YB51_6975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGW87767
LinkDB
All DBs
Position
complement(1421929..1423509)
Genome browser
AA seq
526 aa
AA seq
DB search
MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIDTNNQAIQALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLF
SATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKK
RMKGLKPATAQEAFEAKKKVALKKIEREMADETIRSNFDKFKKDAIQLAAEFTPEELALY
VLTLTVQDPESLPEVEIAREKPLPFKFAPGQAKGKGGRGGRDRDRGGRRDGDRNRDRGGR
RGDRNDRNRRDDKFKRDNRRQDNKKPHQRTSSEKKTGFVIRNKGER
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagatttacaattatcagaagatattttgcttgccgttgagaaggctggt
tttgaaacgccgtcaccaatccaggagcagaccattccgcttgctcttgaaggtaaagat
gtgattggtcaagcccagacggggacagggaaaactgcagcctttggtttgccaaccctc
aacaaaattgacacaaacaatcaagcaattcaggccttgattatcgccccaacacgtgag
ttggcggtgcagagtcaagaagaacttttcaaatttggtcgtgaaaagggtgtgaaagtc
cgctctgtttacggtggctcaagcattgaaaagcaaatcaaggcccttcgttcaggtgct
cacatcgttgttggtacaccaggtcgcctcttggacttgatcaaacgcaaggccctcaaa
cttgacggtgttgaaactctcattcttgacgaggcagatgaaatgctcaacatgggcttc
ttggatgatattgaagcgatcatcgaacgtgtaccagagagccgtcaaacccttctgttt
tctgcaaccatgccagagccaatcaagcgtattggtgtcaagttcatgaaagaacctgag
cacgttaagattgcagcaaaggaattgactaatgtcaatgttgaccaatattatcttcgt
gtcaaagaacatgaaaaattcgacaccatgactcgtcttatggatgttgaccagccagaa
ttgtctattgtctttggtcgtaccaaacgccgtgtcgatgaattgactcgtggtttgaaa
ttgcgtggtttccgtgcagaaggtattcacggagatttggaccagaacaagcgtcttcgt
gtcattcgtgattttaaaaatgatcaaattgatgtcttagttgcgacagacgttgcggcc
cgtggtttggacatctcaggtgtaacgcatgtctataactacgatattccacaggaccct
gaaagctatgtgcaccgtatcggtcgtacaggtcgtgcgggtcaatcaggtcagtctatt
acctttgtttcgccaaacgagatgggctacttggccatcatcgaagatttgaccaagaaa
cgcatgaaaggtctcaagccagcaactgctcaggaagcatttgaagccaagaagaaagtt
gctttgaagaagattgagcgtgaaatggcggatgaaaccatccgtagcaattttgataag
ttcaagaaagatgctattcagttagcggctgaatttacccctgaagagttagcgctttat
gtattgaccttgactgttcaggatccagaaagtctgccagaggtagaaattgcgcgagaa
aaaccactgccattcaagtttgcacctggtcaagccaagggcaagggtggacgtggtggt
cgcgaccgtgatcgcggtggtcgtcgtgatggagaccgcaaccgagaccgcggaggacgc
cgtggtgatcgtaatgaccgcaaccgtcgcgatgacaagtttaaacgcgacaaccgccgt
caggacaacaaaaaaccacaccaacgcacatcaagtgaaaagaaaacaggctttgttatc
cgcaataaaggggagagataa
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