Streptococcus suis 98HAH33 (serotype 2): SSU98_0011
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Entry
SSU98_0011 CDS
T00515
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssv
Streptococcus suis 98HAH33 (serotype 2)
Pathway
ssv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SSU98_0011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssv03400
]
SSU98_0011
Enzymes [BR:
ssv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSU98_0011
DNA repair and recombination proteins [BR:
ssv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SSU98_0011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABP91171
LinkDB
All DBs
Position
7195..9732
Genome browser
AA seq
845 aa
AA seq
DB search
MLTDDLQKGKTVSSLKYFASTYAELRKYKPATFFSSFQKGLGNVKFDALYQFTQHPMQEF
FHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKNLQEYDIHLPVHAADKLVEGQQQV
TIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNAERIKDYSELAVGDYVVPHV
HGIGQYLGIETIEISGIHRDYLTVQYQNSDRISIPVEQIDLLSKYLASDGKAPKVNKLND
GRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQVEFDNYFTHVETDDQLR
SIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYA
NFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLV
IDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQ
TYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSE
IQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSS
RIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILGAAQSGFI
DSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYLPSDYIGDQRQKIEIYKRIK
NIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLRRQHQVTVTFEP
MAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKKEYEILEELISFAEKLKEIK
ARKAE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
ttgttgacagatgatttacagaagggtaaaacagtgtcaagtttgaaatattttgcctca
acttatgctgaattgagaaaatacaaacctgccaccttcttttcaagttttcaaaaaggt
ttaggaaatgtaaagtttgatgctctttatcaattcacacagcatcctatgcaggaattt
ttccaccagattccactgttaaaagatgaattgactcggtatgcgaaatcaaacaatacc
gttgttattcaagcgagttctgatgtaagtttacagactttacagaaaaatttacaagag
tatgatatccatcttccagtacatgcagcagataagttagtagaaggtcagcaacaggtt
acgattggtcagttagcttcaggttttcatttgatggatgagaaactagttttcatcact
gaaaaagagattttcaataagaaaatgaagcgtaagacacgtagaaccaatatttctaac
gctgaacgtattaaggactatagtgaattagcagttggtgactatgttgttccccatgtt
catggtatcggtcaatacttaggaattgagactattgaaatttcaggcattcatcgtgat
tatttaacggttcaatatcaaaactccgatcgcatttctattcctgtagaacaaattgat
cttctctccaaatacttagcgtccgatgggaaagctccaaaagttaataaactaaacgat
ggccggttccaacgaaccaagcaaaaagttcagaagcaagtggaggatattgcagatgat
ttgattaagctttatgcggagcgtagtcagctgaaaggctttgccttttcacctgatgat
gaaaatcaagttgaatttgacaactactttacacacgtggaaaccgatgaccaactccgt
tccattgatgaaatcaaaaaagacatggaaaaagactctccaatggaccgtctgttagta
ggagatgtcggatttggtaagacagaggtagccatgcgcgctgctttcaaagcagtcaat
gatggcaagcaagtagctattcttgtacctacgactgttttagcccagcaacactatgct
aatttccaagaacggtttgcagaatttcccgtcaatgtggatgttatgagtcgttttaaa
acaaaggcagagcaggaaaaaacacttgagaagttgaaaaaaggccaagttgacatcttg
attggtacccatcgccttctatcaaaagatgttgtttttgctgatttaggtttactggtt
attgacgaagagcaacggtttggtgtcaagcataaggaacgcttgaaggaactgaaaaag
aaaatagatgtcctaaccttgactgcaactccgattcctcggacattgcaaatgtccatg
ctgggaatccgcgacttatcagtaattgagactccaccgacaaatcgctatcctgtacaa
acttatgtgatggaaacaaatccttccgttatccgagatgcaatgcttcgagagatagat
cgcggaggtcaggtttactatctttacaataaagttgataccattgaacagaaagtgtct
gaattaaaagaattggttccagaagctactataggatacgtccatggacaaatgtcggag
atccaattagaaaatactctctatgcttttgtagagggtgaatatgatattctagtgacc
acaacaatcatcgaaacaggtgttgatattccaaatgctaatacactgtttattgaaaat
gcagatcatatgggactgtcaactctttatcaacttagaggacgtgttggccgttccagt
cggattgcctatgcctatctcatgtaccgtccagacaagtccttgacagaagtagctgaa
aaacgtttggaggcaatcaagggctttacagaactaggatcaggtttcaagattgccatg
caagatttgtccattcgtggtgcgggaaatattttaggtgctgctcagtcaggttttatt
gattctgtgggatatgagatgtattcacaattgctggaacaagctatcttggaaaaacaa
ggtaaggcaacccaacgtcagaagagtaattccgaggtcaatttacagattgatgcctat
ttaccaagtgattatattggtgatcagcgacaaaaaattgaaatttacaagcgtataaag
aatattgacagtcgtgtcaactatcaagaattgcaagaagaattgattgaccgttttgga
gagtatcctgatgtagtagcctacttgcttgaaatcggtctactgaagtcatttttagac
caagttttctgtcatacagttcttagacgacaacatcaagtgacagtaacattcgaacct
atggctggtcaaattttcctaacgcaagattactttgaagctttatctgtgacaaatttg
aaagctcagataacggaaaataaaggaaaactagctgttgtgtttaacattcaacagaaa
aaagaatatgaaatattagaggaattgatttcttttgccgaaaaattaaaagaaattaaa
gcaaggaaggcagaataa
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