Streptococcus suis 98HAH33 (serotype 2): SSU98_1405
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Entry
SSU98_1405 CDS
T00515
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssv
Streptococcus suis 98HAH33 (serotype 2)
Pathway
ssv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSU98_1405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssv03019
]
SSU98_1405
03016 Transfer RNA biogenesis [BR:
ssv03016
]
SSU98_1405
Enzymes [BR:
ssv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SSU98_1405
Messenger RNA biogenesis [BR:
ssv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSU98_1405
Transfer RNA biogenesis [BR:
ssv03016
]
Prokaryotic type
tRNA degradation factors
SSU98_1405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
RNase_II_C_S1
CSD
FaeA
Motif
Other DBs
NCBI-ProteinID:
ABP92563
LinkDB
All DBs
Position
complement(1336412..1338781)
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AA seq
789 aa
AA seq
DB search
MKNEIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEVAIKKVADRF
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDCKGKVVKH
WIGQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMVKLHETLETMRYKRGALN
FDTAEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVREYGHNPSEKAEHFEQVIPELAKSS
SSLERRAIDAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNL
NEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEIDFAHMPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHYKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaattataaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgataatgctgggcggattactcttcctgct
ccaaaaatctctaagaacaaggtaaccttacaggggattttccgtgctcacaagtcaggt
tttggctttgtgaccattgatgaagaggaagatgatctctttgtcagccgtgacgatgtc
aacttcgctatcgagggcgaccgagtggaagtggctatcaagaaagtggcggacaggttc
aaggggacggctgcggaagcggaagtcattgatattttggaacatagcctgaaaacagcg
gtgggcttgattgtctttgacgaagacaagccagagtatgcaggctacatcaagtctaaa
aaccagaaaatcgctcagaagatttacattaagaagtcacctctggtattgaccggaacg
gaaatcctcaaagttgacattgaagcctatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtggggcataaggatgatgtagggatcgatgtcttggaagttttg
gaatccatggatatcgtgtcggaattccctgacgaagttttggcggaggccaatcgggta
ccagaaagtccgtctgagaaggactttgaaggacgcttggacctgcgagatgagatcatc
tttactatcgacggtgcagatgccaaggacttggatgatgcggtccatatcaagcagctc
aagaatggcaatctggaactgggtgtccatatcgctgatgtcagctactatgtgactgag
ggctcagccttggaccaggaagctgtcaagcggggaacctctgtctatgtgaccgaccgt
gtggtgccaatgctgccagaacgtttgtcaaacggcatttgttccctcaatccaaatgtg
gatcgcctgacccagtcggctattatggaaattgactgcaagggcaaggtggtcaagcac
tggattggccaaacggttatcaaaaccaccttccgtatgacctattccgatgtcaatgac
atgattgcaggtaacaaggaaaagctggacaaatacaagacaatcgtgccaagtgttgag
ctcatggtcaaactccatgaaaccctggaaaccatgcgctacaagcgtggggctctcaac
tttgatacagctgaagctaaaatcatcgtcaacaaggatggtctgccagtcgatattcaa
ctgcgccagcgaggcattgccgagcggatgattgagtccttcatgctagctgccaacgag
tgcgttgccgagcattttgctaagttggacttgccttttatctatcggatccacgaggag
cctaaatcagacaagttgcagaagttcatcgactatgcgactagctttggtctgacggta
tatggtacagccagctctatcagccaggacgcccttcaggatctcatggagcgggtcaag
gatgaaccctatgcggacgtcctcaacatgatgttgctacgttccatgcaacaggcgcgt
tactcagagcacaaccacggccattacggactgggtgcggagttctacacccacttcacc
agtcctatccgccgttatcccgacctgctggttcaccgtatggtgcgggaatatggtcac
aatccttcggaaaaagcagagcattttgagcaggtcattcctgagcttgccaagtcttca
tccagtctagaacgccgtgccatcgatgcagagcgggaagttgaagctatgaagaaggca
gaattcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctctttgttgagttgccaaacaccgttgaaggactgatccatgttaccaacctc
aacgagtactaccagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgt
gtcttccgtgtcggtcagccaatccgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacatgccgtccgaactggatattgtcgaaaaagctttgaaagcc
aagcggagaactgctagtcactccaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcactacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag
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