Streptococcus suis GZ1 (serotype 2): SSGZ1_1316
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Entry
SSGZ1_1316 CDS
T02023
Name
(GenBank) Beta-lactamase-like: RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssw
Streptococcus suis GZ1 (serotype 2)
Pathway
ssw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSGZ1_1316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssw03019
]
SSGZ1_1316
Messenger RNA biogenesis [BR:
ssw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSGZ1_1316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
SUFBD_core
Motif
Other DBs
NCBI-ProteinID:
ADE31772
UniProt:
D5AIV7
LinkDB
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Position
complement(1368501..1370213)
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AA seq
570 aa
AA seq
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MVRKIKWTPVGCPKGVKMSTIKIMALGGVRENGKNLYIAEVNEHIFVLDAGAKYPENEQL
GVDVVVPNFDYLEENKHRVAGVFLSHGHADAIGALPYLLEKVKVPVFGSHLTIELAKLLV
KGNNATKKFNDFHVINAETEIDFGDSVVSFFQTTHSIPESLGIVVKTDEGNIVYTGDFKF
DQAADKFYRTDFGRLAEIGNEGVLALLSDSANADSNVQVASMHEAGEEILNTIADCDGRV
IVAAVASNIVRIQQIFDAAEATGRRVVLTGHDVENIVRTAIQLKKLRLVSERLLVKPKDM
NKYEDHELIILETGRMGEPLNGLRKMSIGRHRYVEIKEGDLVYIVTTPSISKEAVVARVE
NLIYKAGGTVKSITKNLRVSGHGNARDLQLMLNIMKPKYLFPVQGEYRQLDAHAKAALEI
GMYPENIIIVKRGDVMAFEEGDFVHSGAVPAGDVMIDGNAMGDVGNIVLRDRKILSEDGI
FIVAITVNRREKKIISKAKVNTRGFVYVKKSKDILREASELVNTTVENYFTKDSFDWAEL
KSAVRDDLAKFLFDQTKRRPAILPVIMEVK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
ttggtaagaaaaataaaatggacacctgtgggatgtccaaaaggagtaaagatgagtaca
attaaaattatggctcttgggggtgtgcgggaaaatggaaaaaacctgtacattgccgaa
gtgaatgaacatatttttgttttggatgcaggggcaaagtatcctgagaatgaacagtta
ggtgtggatgtagtcgtcccaaatttcgattatttggaagaaaataagcatcgtgtagca
ggggtctttttatctcacgggcatgcagatgctatcggagcgcttccttatctcttggag
aaagtgaaagtgccagtatttggttcgcacttgactatcgaattggctaagctacttgtc
aaggggaataatgctactaagaaatttaatgatttccatgttatcaatgctgaaacggaa
attgatttcggggattcagtggtatctttctttcagacgacccactctattccagagagt
ttaggaattgtcgttaagacggatgaaggaaatattgtctacacaggtgactttaagttt
gaccaggcggcagataagttttatcgtacggattttgggcgattggctgaaatcggtaac
gaaggtgtgttggccctcttgtcagactcagctaatgcagatagcaatgttcaagtagcg
agcatgcatgaggctggggaggaaattctcaatacgattgctgactgtgacgggcgtgtt
attgtggcagcagttgccagcaatattgtacgtattcaacagatttttgacgcggcagaa
gcaactggtcgtcgtgtcgtattgacaggacatgatgtggaaaacattgtccgaacagcg
attcaattgaaaaaacttcgtttggtcagcgaacgcttgttggtaaaaccaaaggatatg
aacaagtatgaagaccatgaattgattattttagaaactggtcgtatgggcgagccgtta
aatggattgcgtaaaatgtctatcggtagacatcgctatgttgaaatcaaagaaggtgat
ctagtttatattgttaccactccaagtatttcaaaagaagcggttgttgctcgtgtggag
aacttgatttacaaggctggtggtaccgtaaaatctatcacaaagaatcttcgcgtctct
gggcatgggaatgcgcgtgatttgcagctcatgctcaacatcatgaagcctaaatatctt
ttcccagttcaaggggagtatcgtcaattggatgctcacgctaaggctgcgcttgaaatc
ggtatgtatccagaaaacattatcatcgttaagcgtggggatgtcatggcttttgaagag
ggggattttgtccatagcggagcggttccggctggtgatgtcatgattgacggaaatgcc
atgggcgatgttggaaatatcgtccttcgtgaccgtaagatcctctcagaagacggtatc
tttatcgtggctatcactgtcaaccgccgtgagaaaaaaatcatttctaaagccaaggtc
aatactcgtggttttgtctacgtgaaaaagagcaaggacatcttgcgtgaggcatcagaa
ttggtgaatacaacggtggaaaattactttacaaaggatagctttgactgggcagagctt
aagagtgctgttcgcgatgatttagcaaaattcctctttgaccaaaccaaacgtcgccca
gctattttgccggtgattatggaagtcaagtaa
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