Streptomyces sp. SirexAA-E: SACTE_3957
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Entry
SACTE_3957 CDS
T01601
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SACTE_3957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssx03021
]
SACTE_3957
03400 DNA repair and recombination proteins [BR:
ssx03400
]
SACTE_3957
Enzymes [BR:
ssx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SACTE_3957
Transcription machinery [BR:
ssx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SACTE_3957
DNA repair and recombination proteins [BR:
ssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SACTE_3957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AEN11800
UniProt:
G2ND48
LinkDB
All DBs
Position
4389034..4392933
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDSDLENRAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGCMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDDEGRNVKGA
DRAFGSTAEAIMAFDARELSLQAKVDIRFPVGTIPPRGWVPPVAEEGEPEYQPGDTFRLR
TSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAVSDIVVPEAKKAIVKGYEDQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLKIAVKG
ADGVLRKTEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAKGRVRIEETEKTKKLVVTPDDGSEETAFPISKRARL
LVGEGDPVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cggacctggtcccacggcgaagtgaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgaacgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgtgagcgcatgggccacatcgagcttgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgttcgtcgac
gaggagcgccgcacccgcgacctcccgtcgctggaggcgcacgtctccgtcgagcgccag
cagatcgagaaccgccgcgactcggacctcgagaaccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgaaggc
gccgagcgcgagatgaagcagctgcgtgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctgcatgggcgccgccgcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacaagcccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgtctcctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggcaaccgcccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgtcagaacctcctcggcaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggccgtcccgtcaccatgccgacccaggac
atggtgctgggcctcttcttcctcaccacggacgacgagggccgcaacgtcaagggcgcg
gaccgggccttcgggtccacggccgaggcgatcatggccttcgacgcccgcgagctgtcg
ctccaggcgaaggtcgacatccgcttcccggtgggcaccatcccgccgcgtggctgggtg
cctccggtcgccgaggagggcgagcccgagtaccagccgggtgacaccttccggctgcgt
acgagcctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtgatcgtggcggcgacgctcgacaacctgaaggccgccggtttccactgggcgacc
cgctccggcgtcaccgtcgccgtgtcggacatcgtcgtgcccgaggccaagaaggccatc
gtcaagggctacgaggaccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagacgaaccccatcttcatgatggtcgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctcacg
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgcggcaccgaccgcggcctcaagctgaagatcgccgtcaagggt
gcggacggtgtgctccgcaagacggaggacgtcgagacctcggtctacgcccgcatgctc
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgcctgccaacgtcgacctcggtgac
gtcctgatcgacgccctggtgggcgccggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggacgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggtgtcgcgccg
atctcggaggccaagggccgcgtccgtatcgaggagaccgagaagaccaagaagctcgtc
gtcaccccggacgacggcagcgaggagacggcgttcccgatctccaagcgtgcccgtctc
ctggtcggcgagggggacccggtcgaggtgggccagaagctcaccgtcggtgccaccaac
ccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtgctgacggacgcggcg
atcaacgccaagtccgactcgctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtggagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgccgttcggt
acgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtag
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integrated database retrieval system
