Streptomyces sp. SirexAA-E: SACTE_4916
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Entry
SACTE_4916 CDS
T01601
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SACTE_4916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssx03019
]
SACTE_4916
Messenger RNA biogenesis [BR:
ssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SACTE_4916
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEN12742
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Position
5452535..5454220
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDVEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVEEGQRERIGVFDCEFIAVNHSIPDALAVAIRTPAGLAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLIDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIDDGAFTAVVPKVEEALNKSAQDGVMEPHQLQQLVRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggtaccccgccgaagctcccgaagggcggtctgcgc
gtcaccccgctcggcggcctgggggagatcggccgcaacatgacggtcttcgagtacggc
ggccgcctgctcatcgtcgactgcggtgtcctcttccccgaggaggagcagccgggcatc
gacctgatccttccggacttcaccaccatccgggaccgcctggacgacgtcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgttccctacctgctccggctgaag
ccggacatcccgctcatcggctccaagctgaccctcgcgctcatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctggaggtggaggaagggcagcgggagcgtatcggt
gtcttcgactgcgagttcatcgcggtcaaccactccatcccggacgcgctcgcggtggcc
atccggacacccgccggcctggctgtcgccacgggtgacttcaagatggaccagctcccg
ctggacggccgcctgaccgacctgcacgcgttcgcacggctgagcgaggagggcatcgac
ctgctgctctccgactcgaccaacgcggaggtccccgggttcgtgccgccggagcgggac
atctccaacgtcctgcgcacggtcttcgccaacgcgcagaagcgcatcatcgtggcgagc
ttcgccagtcacgtccaccgcatccagcagatcctggacgccgcccacgagtacggccgg
cgcgtcgccttcgtcgggcgttccatggtccggaacatgggtatcgcccgtgacctgggc
tatctgaaggtgcccgccgggctggtggtggacgtcaagacgctcgacgacctgccggac
gacgaggtcgtactggtctgcacgggctcccagggcgagccgatggcggccctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtgccgggtgacacggtgatcctggcgtcg
tcgctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggtctgacccgatgg
ggcgcgcacgtcgtccacaagggcaatgcgaaggtccacgtctcgggccacgcgtcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtgcacggt
gagtggcgccacctgcgggccaacgccgaactgggcgcgctgaccggcgtgcccaaggac
cacatcgtgatcgccgaggacggcgtcgtcgtcgacctgatcgacggcaaggcgaagatc
gtcggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcacg
gagacctccctcaaggaccgccgcatcctcggcgacgaggggatcatctcggtcttcatc
gtggtggacagctcctccggcaagatcgtgggcggacctcacatccaggcccgcggttcg
ggcatcgacgacggtgcgttcaccgccgtcgtgcccaaggtcgaggaggcgctcaacaag
tcggcgcaggacggggtgatggagccgcaccagctccagcagctcgtccgccgcacggtg
ggcaagtgggtctcggacacctaccgccggcgcccgatgatccttccggtcgtcgtcgaa
gtctga
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