Streptomyces sp. SirexAA-E: SACTE_4983
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Entry
SACTE_4983 CDS
T01601
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SACTE_4983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssx03019
]
SACTE_4983
03400 DNA repair and recombination proteins [BR:
ssx03400
]
SACTE_4983
Enzymes [BR:
ssx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SACTE_4983
Messenger RNA biogenesis [BR:
ssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SACTE_4983
DNA repair and recombination proteins [BR:
ssx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SACTE_4983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
PglZ_C
HTH_IclR
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEN12808
LinkDB
All DBs
Position
5542092..5544314
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AA seq
740 aa
AA seq
DB search
MSRLSRGVKSSIVGAIGLHGGMDNLELRTEADAILAELVGDPGGKARLREDQWQAVAALV
QERRRALVVQRTGWGKSAVYFVATALLRRRGAGPTVIISPLLALMRNQVESAARAGIQAR
TINSANPEEWDTIYGEVERGETDVLLVSPERLNSVDFRDQVLPKLAATTGLLVVDEAHCI
SDWGHDFRPDYRRLRAMLAELPAGVPVLATTATANARVTADVAEQLGTGAGEALVLRGPL
ERESLRLGVVRLPDAAHRLAWLAEHLDELPGSGIVYTLTVAAAEEATAFLRQRGFRVASY
TGKTENADRLQAEVDLRENRVKALVATSALGMGYDKPDLGFVVHLGSPSSPIAYYQQVGR
AGRGVAHADVLLLPGKEDEAIWRYFADTAFPPEAQVRQTLAALAEAGRPLSVPALEAAVD
LRRSRLESMLKVLDVDGAVRRVKGGWAATGAEWIYEGERYAWVARQRAAEQQAMRDYAST
TGCRMEFLRRQLDDEGAAPCGRCDNCAGPWADPSVSAETLTGATKELDRPGVEVEPRRMW
PTGMPALGIDLKGRIPVKEQCSTGRALGRLSDIGWGNRLRPLLADNAPDGPVPDDVLDAA
VAVLADWARSAGGWASGAADASARPVGVVAVPSLTRPHLVGTLAQGIASVGRLPYLGALT
YTGPDGAHAARRSNSAQRLKALSGAFAVPEELSGALARTPGPVLLVDDLTDSGWTLAVAA
RLLRQAGAEQVLPLVLAAAG
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcggttgtcacgcggggtgaagtcgtcgattgtcggtgccatcgggttgcatggg
ggcatggacaacctggagctccgaaccgaagccgacgccatcctcgccgagctcgtcggt
gacccgggaggaaaggctcggctgcgcgaggaccagtggcaggcggtggccgccctggtg
caggagcgccggcgcgctttggtggtgcagcgcaccggctgggggaagtcggcggtgtac
ttcgtcgccaccgctctgctgcgccggaggggtgcgggcccgacggtgatcatctcgccg
ctgctggcgctgatgcgcaaccaggtcgagtcggcggcgcgggccggtatccaggcgcgc
accatcaactcggccaacccggaggagtgggacaccatctacggggaggtcgagcgcggc
gagaccgacgtgctcctcgtcagtcccgaacgcctcaactccgtcgatttccgtgaccag
gtactgcccaagctcgcggcgacgacgggtctgctggtggtggacgaggcgcactgcatt
tccgactggggacatgacttccgccccgactaccggcggctgcgcgcgatgctggccgag
cttcccgccggtgtgccggtgctggccacgacggcgaccgccaacgcccgggtcaccgcg
gacgtggccgagcagctgggtacgggcgccggggaggcactggtgctgcgcgggccgctg
gagagggagagcctgcgcctgggtgtggtgcgactgccggacgccgcgcaccgcctggcc
tggctcgccgaacacctcgacgagctgccgggatcgggcatcgtgtacaccctcaccgtc
gcagcggccgaggaggccaccgccttcctgcggcagcggggcttccgggtggcctcgtac
accgggaagacggagaacgccgaccggttgcaggccgaggtcgacctgcgggagaaccgg
gtcaaggccctggtggcgacatcggcgctgggcatgggatacgacaagccggacctggga
ttcgtggtgcacctgggctcgccgtcctcgccgatcgcctactaccagcaggtggggcgt
gcggggcgcggtgtggcccatgccgatgtactcctgctgcccggcaaggaggacgaggcc
atctggcgctacttcgccgataccgcgttcccgcccgaggcacaggtcaggcagacgctc
gcggcgctggccgaggcgggacgcccgctgtcggttccggccctggaggcggcggtggat
cttcggcgcagccggctggagtcgatgctgaaggtgctcgacgtcgatggcgccgtcagg
cgggtgaagggcggttgggcggccacgggagccgagtggatctacgagggcgagcgctac
gcgtgggtggcccggcagcgggccgccgaacagcaggccatgcgcgactacgcgagcacg
accgggtgccggatggaattcctgcgccgccagctggacgacgagggcgcggccccgtgc
ggccgttgcgacaactgcgcggggccgtgggcggatccctccgtctcggcggagacgctg
acgggcgcgacgaaggagctggaccgccccggggtggaggtcgagccgcgccgcatgtgg
cctactggcatgcccgccctgggcatcgacctcaaggggcgtattccggtcaaggagcag
tgctccaccggacgtgcgctgggacggctctcggacatcggctggggcaaccggctgcgc
ccgctgctggccgacaacgcaccggacgggccggtccccgacgacgtcctggacgccgcc
gtggcggtcctcgccgactgggcgcgctccgcgggcggttgggcgtccggagccgcggac
gcctcggcccggccggtaggggtcgtcgccgtaccgtccctgacccgaccgcatcttgtc
gggaccctcgctcagggaatcgcttccgtcggtcggcttccttacctgggcgccctgacg
tacaccggccctgacggcgcgcacgcggcacgccgcagcaactccgcccagcgcctcaag
gcgctgtccggcgccttcgctgtccccgaggagctgtccggagccctggcccgtactccc
ggaccggtgctgctcgtggacgacctcaccgactccggctggaccctcgccgtcgctgcc
cgtctgctccggcaggcaggcgcagagcaggttcttccgctggtcctcgccgcggcgggc
tga
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