Streptomyces sp. SirexAA-E: SACTE_5256
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Entry
SACTE_5256 CDS
T01601
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssx
Streptomyces sp. SirexAA-E
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssx03016
]
SACTE_5256
Enzymes [BR:
ssx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SACTE_5256
Transfer RNA biogenesis [BR:
ssx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SACTE_5256
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AEN13072
UniProt:
G2NMJ1
LinkDB
All DBs
Position
complement(5947028..5948302)
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AA seq
424 aa
AA seq
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MTDAQETAADTSLRTTGGAPPDDVAPAPIPLLEPREGIPPVVATDDALAGVVAAFAAGTG
PVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVGCPDLSSLGEALTGTEWILHAATQ
DLPCLRDIGMVPTSLFDTELAGRLAGFPRVGLGAIVENLLGYALEKGHSAVDWSTRPLPD
PWLRYAALDVELLVDLRDALEAELERQGKLEWALEEFDAIASAPPAPPRKDPWRRTSGMH
KVRRRRQIAVVRELWTARDQVAQRRDISPGKVLGDAAIIEAALAMPVNAHALTALPGFGH
RMGRRQLEQWQAAVDRARALPESELPQPGQQPAGPPPPRAWADKDPAAAARLSAARAAVS
ALAEQLHMPQENLITPDTVRRVCWEPPRELTPGAVETALAGYGARRWQIEQVGPLLLRAL
ATEA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaagagaccgcagcagacacatcactgcgaaccaccgggggcgctccc
ccggacgacgtcgccccggcgccgatccccttgctcgaacctcgcgagggcattcccccg
gtggtggcgaccgacgacgccctggccggggtcgtcgctgcgttcgccgcggggaccggc
cccgtcgccgtcgacgccgagcgggcctccggctaccgctacgggcagcgcgcctacctc
gtgcagctgcgccgggaaggcgccgggagcgcgctgatcgacccggtgggctgcccggac
ctgtcctcgctgggcgaggccctgaccggtacggagtggatcctgcacgccgccacccag
gacctgccgtgcctgcgcgacataggcatggtccccacctcgctcttcgacacggagctc
gccggacggctggccggattcccgcgcgtcggcctcggcgccatcgtggagaacctgctc
gggtacgccctggagaagggccactccgccgtcgactggtccacccgcccgctccccgat
ccctggctgcgctacgccgcgctcgacgtcgagctgctggtggacctgcgggacgccctg
gaggcggagctggagcgccagggcaagctggagtgggccctggaggagttcgacgcgatc
gcctcggcgccgcccgctcccccgcgcaaggacccctggcgccggacctccgggatgcac
aaggtgcgccgccgccgccagatcgccgtcgtacgcgagctgtggacagcccgggaccag
gtcgcccagcgccgcgacatctcgcccggcaaggtgctgggtgacgccgcgatcatcgag
gcggccctggccatgcccgtcaacgcgcacgccctgaccgcactgcccggtttcggccac
cgcatgggacgccgccagctggaacagtggcaggcggccgtcgaccgggccagggcgctg
cccgagtcggagcttccgcagcccggccagcagccggccggtccgccgcccccgcgcgcc
tgggccgacaaggacccggccgccgcggcccgtctctcggcggcccgcgccgcggtctcc
gcgctcgccgagcagctgcacatgccgcaggagaacctcatcaccccggacaccgtgcgc
cgggtctgctgggagccgccgagggagctgacgcccggagcggtggagaccgcgctcgcc
gggtacggcgcccgccgctggcagatcgagcaggtcggcccgctgctgctccgtgcgctg
gcgaccgaggcctga
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