Sphingobium sp. SYK-6: SLG_00540
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Entry
SLG_00540 CDS
T01622
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SLG_00540 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_00540 (mutM)
Enzymes [BR:
ssy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SLG_00540 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SLG_00540 (mutM)
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SLG_00540 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
PSMbeta
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BAK64729
UniProt:
G2IIP9
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All DBs
Position
49287..50096
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AA seq
269 aa
AA seq
DB search
MPELPEVETTVAGLRAVLQDAELIEVETRRADMRFPFPEDLRQRLTGARVTALGRRAKYG
LIDTDRGDTMIFHLGMSGRWRIDPLEIGKHDHLLLATARHRLALHDPRRFGFVQLTERSA
LAAFPAFVALGPEPLGEAFDADYLAAALMGRAAPIKAMLLDQRIVAGLGNIYVCEALNMA
GIAPTRAAGRIGKARLARLVDAIRDVLQAAIAAGGSTLRDYARPDGELGYFAKDWRVYGR
EGLACVCGGIVRRRLDSGRSTFYCAACQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcctgaagtcgagacaacggttgccggcctgcgggccgtgctccaggac
gcggaactcatcgaggtcgaaacgcgccgggcggacatgcggtttcccttcccggaggat
ctgcgccagcggctcaccggcgcccgggtgaccgcgctcggccgccgcgccaaatatggg
ctgatcgataccgatcggggtgacacgatgatctttcatctcggcatgtccggccgctgg
cggatcgatccgctggagatcggcaagcatgaccatctcctcctcgcgaccgcccggcac
cggctggccctgcacgatcctcgccggttcggcttcgtccagctcacagaacgctcggcc
ctggcggctttcccggccttcgtcgcgctcgggccggaaccgctcggcgaggccttcgat
gccgattatctggcggcggccttgatgggccgcgcagcgccgatcaaggcgatgctgctc
gatcagcggatcgttgcggggctcggcaacatctatgtgtgcgaggcgctcaacatggcg
ggcatcgcgccgacccgggcggccgggcgcattggcaaggcgcgcctggcacgattggtc
gacgccattcgcgacgtgctccaggcagccatcgcggccggcggctccaccctgcgcgat
tatgcgcgaccggatggcgagctcggctatttcgcgaaggactggcgcgtctatgggcgg
gaaggccttgcctgcgtctgcggcggcatcgtgagacgacgactcgattccggccggtcg
accttctattgtgcggcttgccagcgatag
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