KEGG   Sphingobium sp. SYK-6: SLG_00750
Entry
SLG_00750         CDS       T01622                                 
Symbol
pdhD
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
ssy  Sphingobium sp. SYK-6
Pathway
ssy00010  Glycolysis / Gluconeogenesis
ssy00020  Citrate cycle (TCA cycle)
ssy00260  Glycine, serine and threonine metabolism
ssy00280  Valine, leucine and isoleucine degradation
ssy00310  Lysine degradation
ssy00380  Tryptophan metabolism
ssy00620  Pyruvate metabolism
ssy00630  Glyoxylate and dicarboxylate metabolism
ssy00640  Propanoate metabolism
ssy00670  One carbon pool by folate
ssy00785  Lipoic acid metabolism
ssy01100  Metabolic pathways
ssy01110  Biosynthesis of secondary metabolites
ssy01120  Microbial metabolism in diverse environments
ssy01200  Carbon metabolism
ssy01210  2-Oxocarboxylic acid metabolism
ssy01240  Biosynthesis of cofactors
Module
ssy_M00009  Citrate cycle (TCA cycle, Krebs cycle)
ssy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
ssy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:ssy00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SLG_00750 (pdhD)
   00020 Citrate cycle (TCA cycle)
    SLG_00750 (pdhD)
   00620 Pyruvate metabolism
    SLG_00750 (pdhD)
   00630 Glyoxylate and dicarboxylate metabolism
    SLG_00750 (pdhD)
   00640 Propanoate metabolism
    SLG_00750 (pdhD)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SLG_00750 (pdhD)
   00280 Valine, leucine and isoleucine degradation
    SLG_00750 (pdhD)
   00310 Lysine degradation
    SLG_00750 (pdhD)
   00380 Tryptophan metabolism
    SLG_00750 (pdhD)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SLG_00750 (pdhD)
   00670 One carbon pool by folate
    SLG_00750 (pdhD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssy04147]
    SLG_00750 (pdhD)
Enzymes [BR:ssy01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SLG_00750 (pdhD)
Exosome [BR:ssy04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SLG_00750 (pdhD)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored HI0933_like FAD_binding_2 NAD_binding_8 FAD_binding_3 GIDA AlaDh_PNT_C Thi4 Lys_Orn_oxgnase 3HCDH_N DUF7759
Other DBs
NCBI-ProteinID: BAK64750
UniProt: G2IIS0
LinkDB
Position
72757..74157
AA seq 466 aa
MADQFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAESRETLGGTCLNVGCIPSKALLHAS
EYFEAAAGGKMAAMGIKVKPELDLATMQGQRIDAVKGLTGGVEFLFRKNKVDWLNGLATF
KDAHSVEVAGKTVTAKNIVIATGSSVTPLPGVAVDNAKGIIVDSTGALELDKVPGHLVVI
GGGVIGLELGSVWRRLGAKVTVVEYLDQILPGMDGDVRKEANKIFRKQGIEFRLETKVTG
ATVKGKKATLTLEPAAGGEAEKLEADVVLVAIGRRANTEGLGLDKIGLELNQRGQIETDH
DFSTKVPGVWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPSVVYTQPEIAG
VGLTEEAAKAKGSVKVGKFPMLANSRAKTNHEPDGFVKVIADAETDRVLGVWIVASVAGT
MIAQAAQAMEFGATSEDIAYTCHAHPTHSEAVKEAAMAVLGKPIHV
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggcagaccagttcgattatgatgtcctcgtgatcggcgccggcccgggcggttatgtc
gcggcgatccgtgccgcgcagcttggcctgaagaccgcctgcgcggagagccgggaaacg
cttggcggcacctgcctcaatgtcgggtgcattccctccaaggcgctgctgcatgcgtcc
gaatatttcgaggcagcggcgggcggcaagatggccgccatgggcatcaaggtgaagccg
gaactggaccttgcgaccatgcagggccagcgcatcgacgccgtgaaaggcctcaccggc
ggcgttgagttcctcttccgcaagaacaaggtcgactggctcaacggcctcgccaccttc
aaggatgcgcacagcgtcgaggtggccggcaagaccgtgacggcgaagaacatcgtcatc
gcgaccggtagctccgtgacaccgctccccggcgtcgcggtcgacaatgccaagggcatc
atcgtcgattcgactggcgcgctggagctggacaaggtgccgggtcacctcgtcgtcatt
ggcggcggcgtgatcggcctggaactgggcagcgtctggcgccgcctgggcgcgaaggtc
actgtcgtcgagtatcttgaccagatcctgcccggcatggacggcgacgtgcgcaaggaa
gcgaacaagatcttccgcaagcagggcatcgagttcaggctggaaacgaaggtgaccggc
gcgaccgtgaagggcaagaaggccacgctgacccttgagcccgccgctggcggcgaggcc
gagaagctggaagccgatgtcgtgctcgtcgccatcggccgccgcgccaataccgaaggg
ctggggctggacaagatcggcctcgaactcaaccagcgcggacagatcgagaccgatcac
gacttctccaccaaggtgccgggcgtctgggcgatcggcgatgtgatccccggtcccatg
ctggcgcacaaggccgaggacgagggcatcgccgtcgcggagaacatcgccggcctcacc
ggcatcgtgaatcatgacgtgatcccgagcgtcgtctacacgcagcccgagatcgccggc
gtcggcctgaccgaagaggcggcaaaggcaaagggctctgtgaaggtcggcaagttcccg
atgctggcgaacagccgggccaagaccaatcatgagccggacggtttcgtgaaggtcatt
gccgatgcggagacggaccgggtgctgggcgtctggatcgtcgcgtcggtcgccggcacc
atgatcgcgcaggccgcgcaggccatggaattcggcgccacgtccgaggacatcgcctat
acctgccacgcacatcccacgcacagcgaggctgtgaaggaagcggccatggcggtgctc
ggcaagccgatccacgtctga

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