Sphingobium sp. SYK-6: SLG_00750
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Entry
SLG_00750 CDS
T01622
Symbol
pdhD
Name
(GenBank) dihydrolipoamide dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy00010
Glycolysis / Gluconeogenesis
ssy00020
Citrate cycle (TCA cycle)
ssy00260
Glycine, serine and threonine metabolism
ssy00280
Valine, leucine and isoleucine degradation
ssy00310
Lysine degradation
ssy00380
Tryptophan metabolism
ssy00620
Pyruvate metabolism
ssy00630
Glyoxylate and dicarboxylate metabolism
ssy00640
Propanoate metabolism
ssy00670
One carbon pool by folate
ssy00785
Lipoic acid metabolism
ssy01100
Metabolic pathways
ssy01110
Biosynthesis of secondary metabolites
ssy01120
Microbial metabolism in diverse environments
ssy01200
Carbon metabolism
ssy01210
2-Oxocarboxylic acid metabolism
ssy01240
Biosynthesis of cofactors
Module
ssy_M00009
Citrate cycle (TCA cycle, Krebs cycle)
ssy_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
ssy_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SLG_00750 (pdhD)
00020 Citrate cycle (TCA cycle)
SLG_00750 (pdhD)
00620 Pyruvate metabolism
SLG_00750 (pdhD)
00630 Glyoxylate and dicarboxylate metabolism
SLG_00750 (pdhD)
00640 Propanoate metabolism
SLG_00750 (pdhD)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SLG_00750 (pdhD)
00280 Valine, leucine and isoleucine degradation
SLG_00750 (pdhD)
00310 Lysine degradation
SLG_00750 (pdhD)
00380 Tryptophan metabolism
SLG_00750 (pdhD)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SLG_00750 (pdhD)
00670 One carbon pool by folate
SLG_00750 (pdhD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssy04147
]
SLG_00750 (pdhD)
Enzymes [BR:
ssy01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SLG_00750 (pdhD)
Exosome [BR:
ssy04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SLG_00750 (pdhD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
FAD_oxidored
HI0933_like
FAD_binding_2
NAD_binding_8
FAD_binding_3
GIDA
AlaDh_PNT_C
Thi4
Lys_Orn_oxgnase
3HCDH_N
DUF7759
Motif
Other DBs
NCBI-ProteinID:
BAK64750
UniProt:
G2IIS0
LinkDB
All DBs
Position
72757..74157
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AA seq
466 aa
AA seq
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MADQFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAESRETLGGTCLNVGCIPSKALLHAS
EYFEAAAGGKMAAMGIKVKPELDLATMQGQRIDAVKGLTGGVEFLFRKNKVDWLNGLATF
KDAHSVEVAGKTVTAKNIVIATGSSVTPLPGVAVDNAKGIIVDSTGALELDKVPGHLVVI
GGGVIGLELGSVWRRLGAKVTVVEYLDQILPGMDGDVRKEANKIFRKQGIEFRLETKVTG
ATVKGKKATLTLEPAAGGEAEKLEADVVLVAIGRRANTEGLGLDKIGLELNQRGQIETDH
DFSTKVPGVWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPSVVYTQPEIAG
VGLTEEAAKAKGSVKVGKFPMLANSRAKTNHEPDGFVKVIADAETDRVLGVWIVASVAGT
MIAQAAQAMEFGATSEDIAYTCHAHPTHSEAVKEAAMAVLGKPIHV
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccagttcgattatgatgtcctcgtgatcggcgccggcccgggcggttatgtc
gcggcgatccgtgccgcgcagcttggcctgaagaccgcctgcgcggagagccgggaaacg
cttggcggcacctgcctcaatgtcgggtgcattccctccaaggcgctgctgcatgcgtcc
gaatatttcgaggcagcggcgggcggcaagatggccgccatgggcatcaaggtgaagccg
gaactggaccttgcgaccatgcagggccagcgcatcgacgccgtgaaaggcctcaccggc
ggcgttgagttcctcttccgcaagaacaaggtcgactggctcaacggcctcgccaccttc
aaggatgcgcacagcgtcgaggtggccggcaagaccgtgacggcgaagaacatcgtcatc
gcgaccggtagctccgtgacaccgctccccggcgtcgcggtcgacaatgccaagggcatc
atcgtcgattcgactggcgcgctggagctggacaaggtgccgggtcacctcgtcgtcatt
ggcggcggcgtgatcggcctggaactgggcagcgtctggcgccgcctgggcgcgaaggtc
actgtcgtcgagtatcttgaccagatcctgcccggcatggacggcgacgtgcgcaaggaa
gcgaacaagatcttccgcaagcagggcatcgagttcaggctggaaacgaaggtgaccggc
gcgaccgtgaagggcaagaaggccacgctgacccttgagcccgccgctggcggcgaggcc
gagaagctggaagccgatgtcgtgctcgtcgccatcggccgccgcgccaataccgaaggg
ctggggctggacaagatcggcctcgaactcaaccagcgcggacagatcgagaccgatcac
gacttctccaccaaggtgccgggcgtctgggcgatcggcgatgtgatccccggtcccatg
ctggcgcacaaggccgaggacgagggcatcgccgtcgcggagaacatcgccggcctcacc
ggcatcgtgaatcatgacgtgatcccgagcgtcgtctacacgcagcccgagatcgccggc
gtcggcctgaccgaagaggcggcaaaggcaaagggctctgtgaaggtcggcaagttcccg
atgctggcgaacagccgggccaagaccaatcatgagccggacggtttcgtgaaggtcatt
gccgatgcggagacggaccgggtgctgggcgtctggatcgtcgcgtcggtcgccggcacc
atgatcgcgcaggccgcgcaggccatggaattcggcgccacgtccgaggacatcgcctat
acctgccacgcacatcccacgcacagcgaggctgtgaaggaagcggccatggcggtgctc
ggcaagccgatccacgtctga
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