Sphingobium sp. SYK-6: SLG_00900
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Entry
SLG_00900 CDS
T01622
Symbol
cca
Name
(GenBank) tRNA nucleotidyltransferase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLG_00900 (cca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssy03019
]
SLG_00900 (cca)
Enzymes [BR:
ssy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
SLG_00900 (cca)
Messenger RNA biogenesis [BR:
ssy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SLG_00900 (cca)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
BAK64765
NITE:
SLG_00900
UniProt:
G2IIT5
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All DBs
Position
86849..88069
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AA seq
406 aa
AA seq
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MTLTLPERLPPADWRARAGLTALCDALGAGEGAARFVGGAVRDSLLGISVKDVDIATVLL
PEDVVRRVKAAGFKAVPTGIAHGTITAVLNHWPVEITTLRRDVTTDGRRATVAFGTDWRE
DAARRDFTMNALYADPPDGTLHDYFDGRADLAARRVRFIGDPHARIAEDHLRILRYFRFT
ARFGTMDPDSADYRACVARAASLMSLSRERIADELLRLLGVADPGEVVAAMIADDVLRPV
LPEIDAQGVARLRMLIAREAEADVAPDPLRRLAALLPPDEALADQIGARLRLSNKARARL
RNALAPIEAETPEALAYRIGMTGAIDRMLLGNAFQAADIATVKDWQVPRLPLSGGDLIAM
GLEAGPRVARALQALERAWIAAGFPAEAETRALATQIIVLELRSTQ
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
gtgacactcaccttgccggagcgattgccccctgccgactggcgcgcgcgcgccggactc
accgcgctgtgcgacgcgctcggcgctggcgaaggcgccgcgcgtttcgtgggcggcgcg
gtgcgcgattcgctgctgggcatctcagtcaaggatgtcgacatcgccacggtccttctt
cccgaggacgtggtgcgccgcgtgaaggcggcaggcttcaaggcggtcccgaccggcatc
gcccatggcacgatcaccgccgtgctcaatcactggcccgtggaaatcaccaccctgcgc
cgcgacgtcacgacggacgggcggcgcgcgaccgtagcgttcggcacggactggcgcgag
gatgccgcccgacgcgacttcacgatgaatgccctttatgccgatccgccggacggcacg
ctgcacgactatttcgacggacgcgcggatctggcggcccggcgggtgcgcttcattggc
gatccccatgcgcggatcgcggaggatcatctgcgcatcctgcgttatttccgtttcacg
gcccggttcggcacgatggatccggacagtgccgattatcgcgcttgcgtcgcccgggcc
gccagcctgatgtccctgtcacgcgagcgcatcgccgacgagttgctgcgcttgctgggc
gtggcggatccgggcgaggtggtcgcggcgatgatcgcggacgacgtgctgaggcccgtg
ctcccggagatagatgcgcagggcgtagcgcggctgcgcatgctgatcgcccgggaagcc
gaggcggacgtcgctcccgatcctctgcggcgccttgcggccctgctgccgccggacgag
gcactggccgatcagatcggtgcgcgcctgcgcctctccaacaaggcccgcgcgcggttg
cgcaatgcgctcgcgccgatcgaggcggaaacgccggaagcactcgcctacaggatcggc
atgaccggtgcgatcgaccggatgctgctcggcaatgcctttcaagcggcggatatcgcg
acagtgaaggactggcaggtgcccagacttccgctttccggcggtgacctcatcgccatg
ggactggaagcggggccaagggtcgcgcgggcgctgcaggcgctggagcgggcctggatc
gccgccggcttccccgccgaggcggaaacccgggcactggcgactcagatcatcgtgctt
gagctgcgatcgacccagtag
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