Sphingobium sp. SYK-6: SLG_04090
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Entry
SLG_04090 CDS
T01622
Name
(GenBank) pseudouridine synthase
KO
K06179
23S rRNA pseudouridine955/2504/2580 synthase [EC:
5.4.99.24
]
Organism
ssy
Sphingobium sp. SYK-6
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssy03009
]
SLG_04090
Enzymes [BR:
ssy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.24 23S rRNA pseudouridine955/2504/2580 synthase
SLG_04090
Ribosome biogenesis [BR:
ssy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SLG_04090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
BAK65084
UniProt:
G2IKM1
LinkDB
All DBs
Position
416613..417956
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AA seq
447 aa
AA seq
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MSRGKAGDPAAVRQFTVAADDDGIRLDRWFKRHMPDVSFATVSRWARTGQLRVNGARATP
GDRIEEGQVLRVPPLEAAPDQKAGRTPRARPVLSEDQMAFAESLVIHRDAQALVINKPPG
LATQGGTKTHEHVDGLLDALMFERDDRPRLVHRLDKDTSGALLLARTARAAAQFAKSFSS
RTARKVYWAIVMGVPDVADGVIDLPLAKQPGTGGEKMHVDEENGMPARSRYRIIERAGNR
AAWVELQPYTGRTHQLRVHMAAIGHPIVGDGKYGGKDAFLSGSISRKMHLHARRIRIDHP
DGSPLDVRADPPAHFAETLASLGFDVAEGDLPLEVDSQPSVFEKKVAEKRAASQHAKDMR
KARRGERRSRAGGGAPGGKPGGGKPGGGKPGGGRPGGSKPGTGKPAAGRSAAGKSGGKPA
ADGRPSGGKARPRTTGAPAPGSRGKKR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgagccggggcaaggcaggcgatccggcggccgtgcgccagttcaccgtggctgcggat
gatgacggcattcgcctcgaccgctggttcaagcgacacatgcccgatgtgtccttcgcc
acggtctcgcgctgggcgcggaccggccagttgcgcgtgaacggcgcgcgcgccacgccg
ggcgaccggatcgaggaagggcaagtgctgcgcgtgccgccgctcgaggccgcgccggac
cagaaggccggccggacgccgcgcgcccggcccgtgctgagcgaggaccagatggcgttc
gccgagagcctcgtcatccatcgcgatgcgcaggcgctcgtcatcaacaagccgcccggc
ctcgccacgcagggcggcaccaagacgcatgagcatgtcgacgggcttctcgacgcgctg
atgttcgagcgggacgaccggccacgcctcgtccaccggctggacaaggacaccagcggc
gcgctgctgctggcgcgcacggcgcgtgccgccgcgcagttcgcgaaatccttttcctcg
cgcaccgcgcgcaaggtctactgggcgatcgtgatgggcgtgcccgacgtcgcggacggc
gtcatcgacctgcctctcgccaagcagccgggcaccggcggcgagaagatgcatgtcgac
gaggagaacggcatgcccgcgcgcagccgctatcgcatcatcgagcgggcgggcaaccgc
gccgcctgggtcgagctccagccctataccgggcgcacgcaccagctgcgcgtccacatg
gcggcgatcggccatcccattgtgggcgacgggaaatatggcggcaaggatgccttcctg
agcggctccatcagccgcaagatgcatctgcacgcacgccgcatccgcatcgatcatccc
gacggctcgccgctggacgtgcgggcggacccgccggcccatttcgccgagacgctcgcg
agcctgggcttcgacgtcgccgagggcgacctgccgctcgaagtggatagccagccgagc
gtgttcgaaaagaaggtcgcggaaaagcgcgccgccagccagcatgccaaggacatgcgc
aaggcccggcgcggcgagcgtcgctcacgcgccggtgggggtgctccaggtggcaagccg
ggtggtggcaagccgggtggcggcaagcccggcggtggtcgacccgggggaagcaagccg
ggcacgggcaaaccggcggccggccggtcggcggctggcaaatccggtggcaagccggcc
gcggatggccgtccatcaggcggaaaggcccgaccccgcaccacgggcgcaccggccccc
ggctcacgcggaaagaagcgctga
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