Sphingobium sp. SYK-6: SLG_05910
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Entry
SLG_05910 CDS
T01622
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy00470
D-Amino acid metabolism
ssy00550
Peptidoglycan biosynthesis
ssy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SLG_05910 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SLG_05910 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ssy01011
]
SLG_05910 (murD)
Enzymes [BR:
ssy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
SLG_05910 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ssy01011
]
Precursor biosynthesis
Amino acid ligase
SLG_05910 (murD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
BAK65266
UniProt:
G2IM11
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All DBs
Position
613619..614947
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AA seq
442 aa
AA seq
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MIVSDAFAGKRYAVLGLARSGLATVDALAASGAWVIAWDQREDARAQVAGKAVLGDPMEM
DLNGLDALVVSPGVPLNRHPVTCRARAAGVPIIGDIELFALARPTLPPHRVVGITGTNGK
STTTALIHHIVRVAGLPTRMGGNIGLPILAQDPLKAGGVYVLELSSYQIDLTFTLDCDVA
VLLNVTPDHLDRYADFDAYVASKVRLFGMQSPDHTAIIAVDDDVTRGVAAGLPRVRRVSA
ASVDPAMQARWPALQGPHNAQNVAVAVMVAQALGISDANVGAALESYASLPHRMQRVAEI
DGVLYVNDSKATNAASTAPALAAWPAIGGRPRIHWILGGLAKSESLDECAAGLPNVAHAY
TIGEAGPLFARLLGEADVPVTECELLVTAVAEAAARAQAGDVVLLSPACASFDQFRDFEA
RGDAFAAAVAALGEKAPAGDSR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtctcggacgcctttgccggcaagcgctatgccgtcctcggtctcgcccgctcc
gggctggcgacggtggacgcgctggcggcaagcggtgcctgggtgatcgcctgggaccag
cgggaagacgcgcgcgcgcaggtcgccggcaaggccgtgctcggcgatcccatggaaatg
gacctcaatgggctggacgcgctggtcgtctcgcccggcgtgccgctcaatcgccatccg
gtcacatgccgggcgcgcgcggccggcgtgccgatcatcggggatatcgagctgttcgcg
cttgcgcggcccactttgccgccgcaccgcgtcgtcggcatcaccggcaccaacggcaaa
tcgacgaccaccgcgctcatccatcatatcgtgcgggtcgccggcctgccaacgcggatg
ggcggcaatatcggcctgcccatcctcgcgcaggatccgctcaaggcgggcggggtctat
gtgctcgaactgtcgagctaccagatcgacctcaccttcacgctcgactgcgacgttgcg
gtgctgctcaacgtcacgcccgatcatctcgatcgctatgccgatttcgatgcctatgtg
gcgtccaaggtgcgtctgttcggcatgcagtcgcccgatcacaccgccatcatcgcggtc
gacgacgatgtgacgcgcggcgtggcggcagggctcccgcgcgtccggcgcgtttcggcg
gcatccgtcgatcccgcgatgcaggcccgctggcccgccctgcaggggccgcacaacgcg
cagaatgtcgcggtcgcggtcatggtggcgcaagcgctcgggatttccgacgcgaatgtc
ggcgccgcgctcgaaagctatgccagtctgccgcaccgcatgcagcgcgtggcggagatc
gacggcgtgctctacgtgaacgacagcaaggcgaccaatgccgcctcgaccgcgccggcg
ctggccgcctggcccgcgatcggggggcggccgcgcatccactggatattgggcggcctc
gccaagagcgaatcgctggacgagtgcgccgccggtcttcccaacgtcgcccatgcctac
acgatcggcgaggccgggccgctgttcgcccggctgctgggcgaggccgatgtccccgtg
accgaatgcgagctgctggtcactgccgttgcggaagcggctgctcgcgcgcaggctggt
gatgtcgtgctgctatcgccggcctgcgcatccttcgatcagttccgggatttcgaggcg
cgcggcgatgccttcgcggcagccgtcgccgcgctgggcgagaaggcgcctgcgggggac
agccgatga
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