Sphingobium sp. SYK-6: SLG_10960
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Entry
SLG_10960 CDS
T01622
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssy
Sphingobium sp. SYK-6
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssy03016
]
SLG_10960
Enzymes [BR:
ssy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SLG_10960
Transfer RNA biogenesis [BR:
ssy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SLG_10960
Prokaryotic type
tRNA splicing ligases
SLG_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAK65771
LinkDB
All DBs
Position
complement(1160720..1161946)
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AA seq
408 aa
AA seq
DB search
MTETNFDFQHVEGGKPIKLWTRGVPVDEKAHEQLRKAARMPFVFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLMASDLPDNLEGIRSAIERAVPHGRSVNRG
KRDIGSWGDPPAEIVAAWATLVERFDRITAKYPRFKNTNQLTHLGTLGTGNHFIELCLDT
SSQVWVMLHSGSRGVGNAIGTFFIELAKQDMRKWFINLPDEDLAYFPEGTDHFDDYVEAV
EWAQDFAALNRRMMMTNVIRALRGQIARPFDAELEAVNCHHNYVTRENHFGENVLVPRKG
AVRAAKGTMGIIPGSMGAKSFIVRGLGNAESFESCSHGAGRVMSRTQAKKLVSLDEHIAD
TAGVECRKDESVIDETPKAYKSIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagacgaattttgattttcagcacgttgagggcggcaagccgatcaagctttgg
acgcgcggtgtgccggtggatgagaaggcgcatgagcagctccgcaaggcggcgcgcatg
cctttcgtgttcaagcatgtggcggccatgccggacgtacatgtcggtatcggcgcgacc
gtaggttcagtgatccccaccaagggcgcggtgatcccggcggctgtaggtgtggacatc
ggctgcggcatgatggcggcgcgcacctcgctgatggcgagcgatctgccagacaatctg
gaaggcatccgctcggccatcgaacgggcggtgccgcatgggcgcagcgtcaatcgcggc
aagcgcgatatcggttcgtggggcgacccgccggccgagattgtggcggcctgggccacg
ctcgtggagcggttcgatcggatcacggccaaatatccgcggttcaagaacacgaaccag
ctcacccatctcgggacgctgggaacgggcaaccacttcatcgagctttgcctcgatacc
tccagccaagtgtgggtaatgctgcactcgggctcgcgcggcgtggggaatgcgatcggc
acgttcttcatcgagctggccaagcaggacatgcgcaagtggttcatcaacctgcccgac
gaggatctcgcctacttcccggaagggaccgaccatttcgatgactatgtcgaggcggtg
gaatgggcgcaggacttcgcggcgctgaaccgccggatgatgatgaccaatgtgatccgg
gcgctgcgcggccagatcgccaggcctttcgacgccgagctcgaagcggtgaactgccat
cacaactatgtgacgcgggaaaaccatttcggcgagaatgtgctcgtgccccgcaagggc
gcggtgcgcgcggcgaaaggcacgatgggcatcattccgggctcgatgggcgcgaaatcg
ttcatcgtgcgcggtctgggcaatgcggagtcgttcgagagctgcagccatggcgcgggg
cgggtgatgtcccgcacccaagcgaagaagctggtctcgctcgacgagcatatcgccgat
acggcgggcgtcgagtgccgcaaggacgagagcgtcatcgacgagacgcccaaggcttac
aagtcgatcgaagccgtgatggccgcccaggccgatctggtggagatcgtccatacgttg
aaacaggtggtgtgcgtgaaggggtaa
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