Sphingobium sp. SYK-6: SLG_11720
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Entry
SLG_11720 CDS
T01622
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLG_11720 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssy03019
]
SLG_11720 (pnp)
03016 Transfer RNA biogenesis [BR:
ssy03016
]
SLG_11720 (pnp)
Enzymes [BR:
ssy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SLG_11720 (pnp)
Messenger RNA biogenesis [BR:
ssy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SLG_11720 (pnp)
Transfer RNA biogenesis [BR:
ssy03016
]
Prokaryotic type
tRNA degradation factors
SLG_11720 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAK65847
UniProt:
G2IQ19
LinkDB
All DBs
Position
1262322..1264664
Genome browser
AA seq
780 aa
AA seq
DB search
MFNVKTVEIEWGGKTLKLETGRVARQADGAVLATYGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF
DGETEPDILAMIAASAALTISGVPFMGPIGAVRVGYKDGEYQLNPSLDEVKSGELDLVVA
ATDAAVMMVESEAKELSEEVMLGAVMFAHEESRKVIGAIIQLAEKAAKEPWELNLGDGNA
ELKAKLKDLIGADIAAAYKLTNKSERSNALNSARDKAKEYFAAQGLDAQSVMAGIKLVKK
IEADIVRTAILKEGQRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLTGLSYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKE
DFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGEDFTVLS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITKEIFEAALHQAKDGRAHILGEMNK
ALDSTRSELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISS
SDIAQIEAAKAWILGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERV
EKVADVLKEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPAREPRGDRGDRGPR
REGGDRGDRGGRGGDRDRGPRRDRGDRGGERGERGPRRERNDDDGPAPEFAPAFLKRDDD
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatgtaaagactgtcgaaatcgagtggggcggaaaaaccctcaagctcgaaacg
gggcgcgttgcccgtcaggccgatggcgcggtgctcgcgacctatggcgaaactgtcgtg
ctgtgcgctgtcacggccgccaaatccgtgaaggacgggcaggacttcttcccgctcacc
gtccattatcaggagaaattctcggctgccgggcgcatcccgggcggcttcttcaagcgc
gagcgcggcgcgaccgagaaggagacgctcgtctcccgtctcatcgaccgccccgtgcgc
ccgctgttcccggaaggtttctataacgaaatcaacgtgatcgcgcaggtcctctcgttc
gacggcgagaccgagcccgacattctggcgatgatcgccgcgtcggccgcgctcaccatc
tcgggcgtgccgttcatgggcccgatcggcgcggtccgcgtcggctacaaggatggcgaa
tatcagctcaatcccagcctcgatgaggtgaagagcggcgagctggacctcgtcgtcgcc
gcgaccgacgctgcggtgatgatggtcgagtccgaggccaaggagctttccgaagaggtc
atgctcggcgccgtcatgttcgcgcatgaagagagccgcaaggtcatcggcgcgatcatc
cagcttgccgagaaggccgccaaggagccttgggaactgaacctgggcgacggcaatgcc
gagctcaaggcgaagctcaaggatctgatcggcgcggacatcgcggcagcctacaagctg
accaacaagtccgagcgctccaacgccctcaattccgcgcgggacaaggccaaggaatat
ttcgcggcccagggtctcgacgcccagagcgtgatggccggcatcaagctggtcaagaag
atcgaggcggacatcgtgcgcaccgccatcctcaaggaaggccagcgcatcgacggtcgg
accacgacgcagatccgcccgatcgaggcgatggtgggcttcctgccgcgcacgcacggc
tcggcgctgttcacgcgcggtgagacgcaggccatctgcaccaccacgctgggcaccaag
gatgccgagcagatgatcgacggcctgaccgggctctcctacgagagcttcatgctgcac
tacaacttcccgccttattcggtcggcgaagtgggccgcttcggcgcgccgggtcgccgc
gaggtcggtcacggcaagctcgcctggcgcgcgctgcacccggtgctgcccgccaaggag
gacttcccctacacgatccgcgtgctctcggacatcaccgagtccaacggttcctcctcg
atggcgaccgtctgcggcggctcgctctcgatgatggacgccggcgtgcccctgaagcgc
ccggtctccggcatcgccatgggcctgatcctagaaggtgaggacttcaccgtccttagc
gacatcctgggcgacgaggatcatctcggcgacatggacttcaaggtcgccggcacctcc
gaaggcatcaccacgatgcagatggacatcaaggtcgccggcatcaccaaggagatcttc
gaggcggcgctgcaccaggccaaggacggccgtgcgcacatcctgggcgagatgaacaag
gcgctggacagcacccgttcggaactctcggcccatgccccgcgcatcgagacgatccag
atcgacaagtccaagatccgcgacgtcatcggcacgggcggcaaggtcattcgcgagatc
gtcgcggagaccggcgccaaggtcgacatcgacgacgagggcgtcatcaagatcagctcg
tccgatatcgcgcagatcgaggcggccaaggcctggatcctcggcatcgtcgaggaagcg
gaagtcggcaagatctacaacggcaaggtcgtcaacctggtcgacttcggcgcgttcgtg
aacttcatgggcggcaaggacggtctcgtccatgtctccgagatccgcaacgagcgggtc
gagaaggtggcggacgtcctgaaggaaggccaggaagtcaaggtcaaggtcctcgagatc
gatccgcgcggcaaggttcgcctgtccatgcgcgtcgtcgaccaggagacgggcgaggag
ctggaggacacccgtcctgcccgcgaaccgcgcggtgaccggggcgaccgtggtccgcgt
cgcgaaggcggcgaccggggtgatcgcggcggccgtggcggcgaccgtgatcgcggcccg
cgccgtgaccgtggcgaccggggcggagagcgcggcgagcgcggtccgcgccgcgagcgc
aacgacgatgacggcccggcgcccgagttcgctcccgcgttcctcaagcgcgacgacgac
tga
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