Sphingobium sp. SYK-6: SLG_22760
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Entry
SLG_22760 CDS
T01622
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03030
DNA replication
ssy03430
Mismatch repair
ssy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLG_22760 (dnaE)
03430 Mismatch repair
SLG_22760 (dnaE)
03440 Homologous recombination
SLG_22760 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssy03032
]
SLG_22760 (dnaE)
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_22760 (dnaE)
Enzymes [BR:
ssy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SLG_22760 (dnaE)
DNA replication proteins [BR:
ssy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SLG_22760 (dnaE)
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SLG_22760 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
COE1_HLH
DUF655
Motif
Other DBs
NCBI-ProteinID:
BAK66951
UniProt:
G2II28
LinkDB
All DBs
Position
complement(2461448..2464939)
Genome browser
AA seq
1163 aa
AA seq
DB search
MPHAPYAPLRNLSAYTLLEGAIAPKQLAARAKEQGFPAVALTDRNGLYAAMSFSDAAAKA
GVQPIIGATLSIARPGRPDGAPLVLDWLVLLAQDETGYANLCALVSQAHVDRPIEADAHV
DFEALARHHEGLICLTASGEGALARLIAEDQPDAARAWLDRLEALFGDRLYIELSRTGDP
VMEKAEPALLDLAYARGLPIVATNPACYADAGFHGAHDVLLCIASSSYVESDERPKSSPE
SWMKPADQMVALFDDLPEAIANTLVVAQRCAVMAPKRKPILPSLAGDRAGEEAQLRQDAM
AGLEARLAALDITDEAARRPYFERLEFELGVIIQMGFPGYFLIVADFIKWAKAQDIPVGP
GRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGADHVAQIITFGTLKARAALKDTGRVLQMGYNQVDRLAKLVPNHPTDPWTLERTMNGS
AEFVAEYKADGQIKRLVDQARMLEGLPRNSSTHAAGVVIGDRPLSQLVPLYRDPKSDMPV
TQFDMKYVETAGLVKFDFLGLKTLSVLQRAVQLLAKRDIHVDLNALSWDDQKVYDLLKRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIVALVSLYRPGPMDNIPLFGRRKNGQEDIEYPH
PLLEPILNETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIKAEMDAQRVTFVEG
CKTNNIDKKKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPAEFYAGSMAFD
IHQTDKLCVFVDDMRRMGVPCLAPDINLSDADFTVEPDPAGSGQMAVRYALGGLKGVGEK
AMETLVEAREQGGRFRDLDDLAGRIEPRLLNRRQLESLAAAGAFDSLGLDRAVVHAAAET
ILSVAAKAAEQRESGQGGLFGGDDAAHADVPLPTDAVWSQSERMAQEKEAFGFYFSAHPV
DRYRQISKERGVRTYAELCGQSSGLGSGERNQAAMAALVEEIRWRDTRRGGRYVAATFSD
SSGQFQASCFDEEGCKLLARLHEENECALLGVELDRQPGEETPRVTVRNVTPFARVASVA
KLRMTVSVDAVEAIAPLAGMLSGRRGGRSRVEITTPLPEGGDAIVCVGEDFQLDGELAER
IEAIAGVRAVVMTPIGPQLRVVA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgcgccttatgccccgcttcgcaatctatcggcctatacgctgcttgaaggg
gcgatcgcgccaaagcaactcgcggcgcgggcgaaggagcagggctttccggccgttgcg
ctgacggaccgcaatgggctctatgccgccatgtccttctccgacgcggccgccaaggcc
ggtgtccagcccatcatcggcgccacattgtccatcgcgcggccgggccgtccggatggt
gccccgctggtgctcgactggctggtcctgttggcgcaggacgaaacgggctatgccaat
ctctgcgcgctggtgagccaggcgcatgtcgaccggccgatcgaggcggatgcgcatgtc
gatttcgaggctctggcacggcatcatgaagggctgatctgtctgaccgcctcgggcgaa
ggcgcgctggcgcggctgatcgcggaggaccagcccgacgcggcccgggcctggctcgac
cgactggaggcgctgttcggcgaccggctctacatcgagctttcgcgcaccggcgacccg
gtgatggaaaaggcggagcccgcactgctcgacctcgcttatgcgcggggcctgccgatc
gtcgccaccaatcccgcctgctatgccgatgccggcttccatggcgcgcacgacgtgctg
ctgtgcatcgccagcagcagctatgtcgagagcgacgagcgtcccaaaagctcaccggaa
agctggatgaagccagcggaccagatggtcgcgctgttcgatgacctgccggaagcgatc
gccaatacgctggtcgtggcgcaacgctgcgcggtcatggcgccaaagcgcaagcccatc
cttcccagcctggcgggagaccgcgccggcgaggaagcgcagctgcggcaggacgccatg
gcagggctggaagcgcggctcgcagcgctggacatcacggacgaggccgcgcgccggccc
tatttcgagcgactcgaattcgagctgggcgtcatcatccagatgggcttccccggctac
ttcctcatcgttgccgatttcatcaaatgggccaaggcgcaggacattccggtggggccg
gggcgtggatcgggcgcgggttccgtggtggcctgggcactcaccatcaccgatctcgat
ccgctgcaactcggcctgctgttcgagcgcttcctcaatcccgagcgcgtctcgatgccg
gacttcgacatcgacttctgcgaaacgcggcgtggcgaggtgatccgctacgtccagcag
aaatatggtgccgatcatgtcgcgcagatcatcaccttcggtacgctgaaggcccgcgcg
gcgctcaaggataccggccgcgtgctgcagatgggctataatcaggtggaccgcctggcc
aagctggtgcccaaccacccgaccgatccctggacgctcgagcgcacgatgaacggctcg
gcagagttcgtcgcggagtacaaggcggacggccagatcaagcggctcgtcgatcaggca
cggatgctggagggcttgccgcgcaacagctccacccatgccgccggcgtggtgatcggc
gaccggccgctttcccagctcgttccgctctatcgcgatcccaagtccgacatgccggtc
acgcagttcgacatgaaatatgtcgagacggcggggcttgtgaagttcgactttctcggc
ctcaagacgctgtccgtgctccagcgtgcggtgcagctgctggcgaagcgggacatccat
gtcgatctcaacgcgctgagctgggacgaccagaaagtctacgacctgctcaagcgcggc
gacacggtgggcgtgttccagctggaatcggaaggcatgcgcaagacgctcgcggccgtc
cgtcccacgaacttcggcgatatcgtcgcgctcgtctcgctctaccggccgggcccgatg
gacaacatcccgctcttcggccgacgcaagaacgggcaggaggacatcgaatatccgcat
ccgctgctggagccgatcctgaacgagacctacgggatcttcgtctatcaggagcaggtg
atgcaggcggcgcagatcctcgccggctattcgctcggcggcgccgatctgctgcggcgc
gcgatgggcaagaagatcaaggcggagatggacgcgcagcgcgtcaccttcgtcgaaggg
tgcaagaccaacaatatcgacaagaagaaggccaacgagctgttcgacttgatcgacaag
ttcgcaggctacggcttcaacaagagccacgccgcggcttatgcgctgctcgcctatcag
acggcctggctcaaggcgcatcacccggccgaattctatgccggctccatggccttcgac
atccaccagaccgacaagctctgcgtgttcgtggacgacatgcgccgcatgggcgtcccc
tgcctggcgccggacatcaacctgagcgacgcggacttcaccgtggagcctgatcccgcc
gggtccggccagatggcggtgcgctatgcgctgggtggcctgaagggcgtgggcgagaag
gccatggaaacgctggtcgaagcacgcgaacaaggcgggcgcttccgcgatctcgatgac
ctggcgggacggatcgagccgcgcctgctcaaccggcgccagctcgaaagcctcgcggct
gcgggcgctttcgattcgcttggtctggaccgcgcggtcgtccatgccgccgccgagacc
atcctctccgtggctgccaaggcggccgaacagcgcgagagcgggcaagggggcctgttc
ggcggggacgatgccgcgcatgccgatgtgccgctgccgaccgatgccgtctggtcgcag
agcgagcggatggcgcaggagaaggaagcgttcggtttttacttctccgcccatcccgtg
gaccgttatcgccagatcagcaaggagcgcggcgtgcgcacttatgccgagctgtgcggg
caatcatccggcctggggtcgggcgagcgcaaccaggccgcgatggcggctctcgtggag
gaaatccgctggcgcgacacgcgccggggcgggcgctacgtggctgccaccttctctgac
agcagcggccagttccaggcgagctgtttcgacgaggaggggtgcaagctgctcgcgcgg
ctgcatgaggagaatgaatgcgcgctgctcggtgtcgagctggaccgccagcccggtgag
gaaaccccgcgcgtcacggtgcgcaatgtcacgcccttcgcgcgcgtggccagcgtggcc
aagctgcgcatgacggtgagcgtggacgccgtggaagccatcgcgccgctggccggcatg
ctctccggccggcgtggcgggcgctcgcgcgtcgagatcacgacgcccctgccggaaggc
ggcgacgcgatcgtctgcgtgggcgaggatttccagctcgatggcgaacttgccgagcgc
atcgaagcgatcgcaggcgtgcgcgcggtcgtcatgacgccgatcggcccgcaattgcgc
gtggtggcttga
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