Sphingobium sp. SYK-6: SLG_23450
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Entry
SLG_23450 CDS
T01622
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy00300
Lysine biosynthesis
ssy00470
D-Amino acid metabolism
ssy01100
Metabolic pathways
ssy01110
Biosynthesis of secondary metabolites
ssy01120
Microbial metabolism in diverse environments
ssy01230
Biosynthesis of amino acids
Module
ssy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SLG_23450 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SLG_23450 (dapF)
Enzymes [BR:
ssy01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
SLG_23450 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
BAK67020
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Position
2526611..2527438
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AA seq
275 aa
AA seq
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MSQNAPLPFAKMHGLGNDFVVIDTRETPVAMDAPLARAIADRKTGVGCDQLILIGASDRA
DVSMRIFNQDGSEVEACGNATRCVPLFTGRDVTIETKAGLLHAARIGGLVSVDMGEPRFG
WEDIPLAYAMDTLAMPASWDELPPPAAVNVGNPHVVFFLDDPARVDMARLGPLIETDPLF
PRRVNVNFAHLVDDDHIRLTVWERGAGFTRACGTGACATAVAAIRRKLAHGPVRVTLEGG
DLLIDWTPGGHITMTGPAVHVFDGVLDPGSFPATP
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaaacgctcccctgcccttcgccaagatgcatggcctcggcaatgatttcgtc
gtgatcgacacgcgcgagacgccggtcgccatggacgcgccgctggcgcgggccattgcg
gacaggaagacgggcgtgggatgcgatcagctcatcctcatcggcgcctcggaccgcgcg
gatgtgagcatgcgcatcttcaatcaggacggcagcgaagtggaggcctgcggcaacgcc
acgcgctgcgtgccgctgttcactggccgggacgtgacgatcgagaccaaggcggggctg
ctgcatgcggcgcgcatcggcgggctggtgagcgtcgacatgggcgagccgcgcttcggc
tgggaggacatcccgctcgcttatgccatggacacgcttgccatgccggcaagctgggac
gagctgcccccgccggccgccgtgaatgtcggcaatccgcatgtcgtcttcttcctcgac
gatcccgcgcgcgtcgacatggcccggctcggcccgctcatcgagaccgatccactgttc
ccgcgccgcgtgaacgtcaatttcgcgcatctcgtggatgacgaccatatccgcctcacc
gtgtgggagcgtggcgcgggcttcacgcgggcctgcggcacgggcgcctgcgccaccgcc
gtcgccgccattcgccgcaagcttgcgcacggcccggtgcgcgtgacgctcgaaggcggc
gacctgctcatcgactggacgccgggcggtcacatcacgatgacaggccctgccgtccat
gtgttcgacggcgtgctggacccgggcagcttccctgccacgccatga
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