Sphingobium sp. SYK-6: SLG_24280
Help
Entry
SLG_24280 CDS
T01622
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SLG_24280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_24280 (mfd)
Enzymes [BR:
ssy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLG_24280 (mfd)
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SLG_24280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAK67103
UniProt:
G2III0
LinkDB
All DBs
Position
2608935..2612399
Genome browser
AA seq
1154 aa
AA seq
DB search
MTDIQRILSARAPLTLSGVPNGFLPVLLADLARAAKGRLCFIAPDAQAMDAIEQSVGYFA
PEMAVVRIPAWDCLPYDRASPSLRAASERLAGLQALQAPLKGPQLVLTTISAITQKTLTP
FRIRQMVARLAPGERIAIDRLVALLQSNGYVRTDTVHDAGEYAVRGGIVDLFPSGEPGPL
RLDFFGDEIETLRRFDPSTQRTIEAVPGFMLLPASEALLDEESIKRFRSRYREMFGATAT
GDPLYQAVSDGRRLAGMEHWLPLFEERLVPLFEHLADDTLWLRDGGVASAADARFEAIRD
YHANRVSAAGASPGSYRPLPPEQLYLAGEQWADAITALPIHATSSFHEPESASVLDFAVD
SARDFAPERAQNANVYEAVGRHLEQAGRKGRKRIIASYSAGARERLAGLLADHGVKRLTI
VDSWQEAQGTAAGGAVALAVLPLDHGFATAELEVLTEQDMLGDRLVRRAKRRKSADAFLA
ELATLSPGDLVVHADHGIGRYEGLTSIPVGKEPHDCVELHYAGGDKLYVPVENLDVLSRY
GSGEEGVSLDKLGGEAWQRRKARMKERIREIAGELLATAAQRALRPAPVFERESAGYPAF
VDRFPYEETEDQDRAIADVLEDLAAGRPMDRLVCGDVGFGKTEVALRAAFVTAMAGSQVA
LICPTTLLARQHHLNFEERFRGFPLKIGRLSRLVGANETKATKEGLADGSIDIVIGTHAL
LAKGLTFKRLGLVIVDEEQRFGVTHKERLKQLKADVHVLTLTATPIPRTLQMAMSGLREL
SVIQTPPVDRLAVRTYVMPWDDVVLREALLREHYRGGQTYFVVPRISDMADMEDFLREKV
PEVRFISAHGQMSASEVEERMSAFYERRYDVLLSTTIVESGLDIPSANTIIIHRADRFGL
AQLYQLRGRVGRSKTRAYAYMTTPADRVMTETADKRLKVLSDLDTLGAGFQLASHDLDIR
GAGNLVGDEQSGHIKEVGFELYQSMLEDAIMEAKAQGAKMPLARQDWSPQINVEAPILLP
EDYVPDLDLRMGLYRRINELEDKAEIEAFAAELIDRFGPLPDPTRNLLTLIEVKLNCRTA
GISRMDIGPRGALVSFHNDQCPNLAGLLGYVQKIGQIAKLRPDSKLVIQRAWGDPKARLN
GALKLSQGLAKAIG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatccaacgcatcctttccgcccgggcgccgctcaccctgtccggcgtcccc
aacggcttcctgccggtgctcctcgccgacctcgcacgcgcggcgaaggggcggctgtgc
ttcatcgcacccgacgcgcaggcgatggacgccatcgagcagagcgtgggctatttcgcg
ccggaaatggccgtggtgcgcatcccggcatgggattgcctgccttatgaccgcgcctcg
ccctcgctgcgcgccgcatcggaaaggctggcgggactgcaggcgctccaggcgccgctg
aaaggcccacagctcgtcctcaccacgatcagcgccatcacccagaagacgctgacgccg
ttccgcatccgccagatggtggcgcggctggcgccgggcgagcgcatcgccatcgaccgg
ctggtcgcgctgctccagtccaacggctatgtccgcaccgacaccgtccatgacgcgggc
gaatatgcggtgcgcggcggcatcgtcgatctcttcccctccggcgaacccggcccgctg
cggctcgacttcttcggcgacgagatcgaaacgctgcgccgcttcgatccttccacccag
cggacgatcgaggcggtgcccggcttcatgctgctgccggcctccgaagcgctgctggac
gaggaaagcatcaagcgcttccgcagccgctatcgcgagatgttcggcgccacggcgacg
ggcgacccgctctatcaggccgtgagcgacggccgccgcctcgcgggcatggaacactgg
ctgccgctgttcgaggaacggctggtgccgctcttcgagcatctcgcggacgacacgctc
tggctgcgagacggcggcgttgccagtgcggcggacgcgcggttcgaggcaatccgcgat
tatcatgccaatcgggtgagcgccgccggggcgtcgccgggcagctaccggccgctcccg
cccgagcagctctatctggccggcgagcaatgggcggacgccatcaccgctctgccgatc
catgccacgtcatccttccacgaaccggaaagtgccagcgtcctcgacttcgcggtggac
agcgcacgggatttcgcgcccgaacgcgcacagaacgcgaatgtctacgaggccgtggga
cggcatctcgaacaggccgggcgcaaagggcgcaagcgcatcatcgccagctattcggcc
ggcgcgcgcgagcggctggcgggcctgctcgccgaccatggcgtcaagcggctgacgata
gtcgacagctggcaggaagcgcagggcacggctgccggcggcgcggtggcgctcgccgtg
ctgccgctcgaccacggcttcgccaccgccgagctggaagtgctgaccgagcaggacatg
ctgggcgaccggctggtgcgcagggccaagcgccgcaagagcgccgatgccttcctcgcc
gagctggcgacgctctcgccgggcgatctcgttgtccatgccgaccatggcatcgggcgc
tacgagggcctgacgagcatcccggtcggcaaggaaccgcacgactgcgtcgagctccat
tacgcgggcggtgacaagctctacgttccggtcgagaatctggacgtgctttcccgctac
ggatcgggcgaggaaggtgtctcgctcgacaagctcggcggcgaggcatggcagcggcgc
aaggcgcggatgaaggagcgcatccgcgagatcgcgggtgaattgctggctaccgccgcg
cagcgcgcattgcggcccgcgcccgtgttcgagcgggaaagcgccggctacccggccttc
gtcgatcgcttcccctatgaagagaccgaggatcaggaccgggcgatcgccgatgtgctg
gaggacctggcggcgggcaggccgatggaccggctggtgtgcggcgatgtcggcttcggc
aagacggaagtggcgctgcgcgccgcgttcgtgacggcgatggcgggatcgcaggtcgcg
ctcatctgcccgaccacgctgctggcgcggcagcatcatctgaacttcgaggagcgcttc
cggggcttccccctgaagatcggccggctctcgcggctcgtgggcgccaacgagaccaag
gcgacgaaggaaggcctcgccgacggatcgatcgacatcgtgatcggcactcatgcgctg
ctggccaaggggctgaccttcaagcggctcgggctggtcatcgtggacgaggaacagcgc
ttcggcgttacccacaaggagcggctcaagcagctcaaggcggacgtccatgtgctgacc
ctgacggccacgccgatcccgcgcacgctgcagatggcgatgagcggcctgcgcgagctg
agcgtgatccagacgccgccggtcgaccggctcgcggtgcgcacctacgtcatgccatgg
gatgacgtggtgctgcgcgaggccctgctgcgcgagcattatcgcggcgggcagacctat
ttcgtggtgccgcgcatctccgatatggcggacatggaagacttcctgcgcgagaaagtg
cccgaggtgcgcttcatctccgcgcatgggcagatgtccgccagcgaagtcgaagagcgc
atgtctgccttctacgagcgccggtatgacgtgctgctctccaccaccatcgtggaaagc
ggcctcgacatccccagcgcgaacacgatcatcatccaccgcgcggaccggttcggcctc
gcccagctctatcagctgcgtggccgcgtgggccggtccaagacgcgcgcttatgcctat
atgacgacacccgccgaccgggtgatgaccgagacggcggacaagcggctcaaggtcctc
tccgacctcgacacgctgggcgcgggcttccagctcgccagccacgatctcgacattcgc
ggcgcaggcaatctggtgggggacgaacaatccggccacatcaaggaagtcggcttcgaa
ctctaccagtcaatgctggaagacgcgatcatggaggccaaggcgcagggcgcgaagatg
cccctcgcccggcaggactggtcgccccagatcaatgtcgaggcgccgatcctgctgccc
gaggactatgtgccggacctcgacctgcgcatgggactctatcgccgcatcaacgagctg
gaggacaaggccgagatcgaggcgttcgccgccgagctcatcgatcgcttcggcccgctg
ccggacccgacccgcaatctgctcacattgatcgaggtgaagctcaattgccgcaccgcc
ggcatctcccgcatggacatcggcccgcgcggcgcgctggtctcgttccacaacgaccag
tgccctaatctcgccggcctgctgggctatgtgcagaagatcggccagatcgcgaagctc
cgcccggacagcaagctcgtcatccagcgggcatggggcgatcccaaggcgcgcctcaac
ggggcgctgaagctcagccaggggctggcgaaggcgatcggctga
DBGET
integrated database retrieval system
