Sphingobium sp. SYK-6: SLG_35380
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Entry
SLG_35380 CDS
T01622
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SLG_35380 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssy03021
]
SLG_35380 (rpoA)
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_35380 (rpoA)
Enzymes [BR:
ssy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SLG_35380 (rpoA)
Transcription machinery [BR:
ssy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SLG_35380 (rpoA)
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SLG_35380 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF211
RNA_pol_L_2
MHC_I_2
IDH
Motif
Other DBs
NCBI-ProteinID:
BAK68213
UniProt:
G2IPN2
LinkDB
All DBs
Position
complement(3827776..3828837)
Genome browser
AA seq
353 aa
AA seq
DB search
MTVNIKNWQELKKPNGLEIKASGDPKRRATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTAIKIENVLHEFSSLAGVREDVTDIVLNVKQIALRMEGDGPRRLQLSATGPAAVKAGDI
AVTGDIQVMNPDLVICHLDEGASFNMELTCDSGKGYVPAVNNRPADAPIGLIPVDALYSP
VRQVAYKVENARIGQELDYDRLNLTIETDGTVTPEDAVAYAARILQDQLQLFVHFEDHLP
SAMPSAGAGAAAAEEGEGDTNQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTE
AEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEIAKKLEQELLG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaattgaagaagcccaatggcctcgagatcaag
gccagtggcgacccgaagcgccgcgcgacctttgtcgccgagccgctcgagcgcggcttc
ggcctgacgctgggcaatgcgttgcggcgtgtgctgctttcctccctgcagggcgctgcc
gtcaccgcgatcaagatcgagaacgtgctccacgaattctccagcctcgctggcgttcgt
gaggacgtgaccgacatcgtgcttaacgtgaagcagatcgcgctccggatggaaggcgat
ggtcctcgccggcttcagctttccgccacgggtccggcggccgtcaaggccggggatatc
gcggtgaccggcgacatccaggtcatgaacccggatctggtgatctgtcatcttgacgag
ggcgccagcttcaacatggagctgacctgcgacagcggcaagggctatgtcccggccgtg
aacaaccgcccggccgacgcgccgatcggcctcattccggtggatgcgctttactcgccc
gtccgccaggtggcctacaaggtggagaacgcccgtatcggccaggagctggactatgac
cggctcaacctgaccatcgagacggacgggaccgtcacgccggaagacgcggtcgcttat
gccgcgcgcatcctgcaggaccagctccagctcttcgtccacttcgaggatcatctgccg
agcgcgatgccgagcgctggcgcaggtgctgcggcggccgaggaaggcgaaggcgacacc
aaccagatcaaccgctatctgctcaagaaggtggatgagctggagctctcggtgcgcagt
gccaactgcctcaagaacgacaacatcatctatatcggcgatctggtccagaagaccgag
gccgagatgctccgcacgccgaacttcggccgcaagagcctcaacgagatcaaggaagtg
ctctcgtccatgggtctgcgtctgggcatggatatccccggctggccgccggagaatatc
gaggaaatcgccaagaagctcgagcaggaactgctgggctga
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