Sphingobium sp. SYK-6: SLG_37920
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Entry
SLG_37920 CDS
T01622
Name
(GenBank) putative 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssy
Sphingobium sp. SYK-6
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssy03016
]
SLG_37920
Enzymes [BR:
ssy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SLG_37920
Transfer RNA biogenesis [BR:
ssy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SLG_37920
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BAK68467
UniProt:
G2IRA1
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All DBs
Position
4077964..4078581
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AA seq
205 aa
AA seq
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MTVYLHEEDLPADVLAEGAVAIDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPHSNFA
APNLRAIIADPNRLKLFHFGRFDIAALQHYLGVLAAPVYCTKIASRLTRTYTDRHGLKEL
VRELLGFDISKQQQSSDWGSPQLSDAQRDYAASDVRYLHLLKAELDQRLAREGRTALAQA
CFDFLPHRALLDLAGWPETDIFAHA
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtatatctgcatgaagaagacctgcccgcagacgttctggccgaaggggcagtg
gcgatcgacacggaaaccatgggcctcatcacgccgcgcgaccgattgtgcctggtccag
atcagcgatggccggggggacgagcatctcgtgcgtttcgcgccgcacagcaatttcgcc
gcgccgaatctgcgcgccatcatcgccgatccgaatcggctcaagctcttccatttcggg
cgcttcgacatcgccgcgctccagcattatctcggtgtgctcgccgcgcccgtctactgc
accaagatcgcctcgcggctcacccggacatacaccgatcgccatggcctcaaggagctg
gtgcgcgagctgctgggtttcgacatcagcaagcagcagcagagctcggactggggaagc
ccgcaactgagcgacgcccagcgggattatgccgcctccgacgtgcgctatcttcatctg
ctcaaggccgaactcgatcagcggctcgcgcgcgaagggcggacggcactggcccaggcc
tgcttcgacttcctgccccatcgggcgctgctcgatcttgccggatggccggagacagac
attttcgcccatgcgtga
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