Sphingobium sp. SYK-6: SLG_p_01220
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Entry
SLG_p_01220 CDS
T01622
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy03420
Nucleotide excision repair
ssy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SLG_p_01220
03430 Mismatch repair
SLG_p_01220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_p_01220
Enzymes [BR:
ssy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLG_p_01220
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLG_p_01220
MMR (mismatch excision repair)
Other MMR factors
SLG_p_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAK68710
UniProt:
G2IU35
LinkDB
All DBs
Position
pSLPG:121943..123715
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AA seq
590 aa
AA seq
DB search
MADEETAADAAGRLALERVYACFDAGQSFRLEAGAGAGKTYSLEKALRRLIELRGTELVR
KRQQIGCITFTNVAKDEIIARVQAHPAVRPETIHGFCWSVLQDFQPQLRAIVPDLPGWGE
RLADAGVGGLGARKVNYDLGYPRVTPDEVSLKHEDVLTLMTELLARPKFRLVLAKRYPVL
LIDEYQDTDAGFVEALKQHFLGTGTGPIIGLFGDHWQKIYGEGCGAVEHAALEVIDKNAN
FRSAEPIVAVLNRMRPDLEQIPSDPDAPGEARIFHTNAWPGQRRTGQGGGHWTGDTSPEA
ARAYLDHLKQRLSDEGWDFAVERTKILMLSHSVLAKEQGYPTIQSIYGQFNDAWLKKEDP
HIKFLADQLEPACAAFQAKRYGEMFESLGAGRPCIRRHHDKVAWTQSLEQLIQLRATGTI
GAVIDLIKGQAHMHLPEAVLDREQRLADAGPEPVEGESRRIAQLRRLRDVAYTELMAVDA
FIDGHTPFATKHGVKGAEFENVLVIVGRGWNKYNFAQMLERLDPGPPADKVESFESNRNL
FYVACSRPKRRLALLFTQILSELAMAKVTALFGEANVIPLPADPAGGAAP
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgaagagaccgccgccgacgcggccggccgccttgcacttgagcgtgtctat
gcgtgcttcgatgccggacaaagcttccggctcgaggcaggcgcgggcgcaggcaagaca
tattccctagaaaaggcgctgcgccgcctgatcgaacttcgcggtacggaacttgtgcgt
aagcgccaacagattggttgcatcacgttcacgaacgtggcgaaggatgagattatcgcg
cgcgttcaggcccacccggcggttcggccggagaccattcacggattttgttggtcagta
ttgcaggactttcagccccagctccgcgcgatcgtgcctgacttgccgggatggggagaa
cgtctcgccgatgccggggtgggggggctaggcgcgaggaaggtcaattacgacctcggc
tatccccgggtgacgccagacgaggtgtcattgaagcacgaagacgtgctgacgctgatg
acggagctgctggcacggcccaagtttcgcttagtgctagcgaagcgctatcccgtgctg
ctgattgacgaatatcaggacaccgatgcgggcttcgtagaggctctaaagcagcatttc
ctaggtacgggtacggggcctatcattggcctgttcggcgaccattggcagaagatctac
ggtgagggatgcggtgcggtcgagcacgcagcactcgaggtgatcgacaaaaacgccaat
ttccgatccgccgaacccatcgtcgcggtgctcaatcgcatgcgacccgatctcgaacag
atccccagcgacccggatgcgccgggtgaggctcgaatctttcacacgaatgcatggccg
ggccagcgccgaacgggccagggcggtggtcactggactggcgacacgagccccgaggcg
gcacgcgcctatctcgatcacctgaagcagcgattgtcggatgagggctgggactttgcc
gtcgaacgcaccaagatcctgatgctcagccacagcgtgctggcgaaggaacagggctat
ccgaccatccagagcatttatggccagttcaacgatgcctggctcaagaaagaagacccc
cacatcaaatttctggccgaccagctcgagccagcatgcgcggcctttcaggcgaagcgc
tatggcgagatgtttgagagcctaggcgccggcaggccgtgcatccgtcggcatcacgac
aaggtcgcatggacgcagtctctcgaacagcttatccaattgcgagcgaccggcacgatc
ggcgccgtcatcgacctcatcaaaggccaggctcacatgcatctgcccgaggcggtgctg
gaccgcgagcaacgcttggccgacgccggacccgaaccggtcgaaggcgagtctcggagg
atcgcccagctgcgaaggctacgggacgtcgcctacaccgagctgatggcggtggatgcg
ttcatcgatggtcacacgcccttcgccaccaagcacggcgtgaagggtgcggagttcgag
aacgtgctcgtcatcgtcggccgtggctggaacaagtataatttcgcgcagatgctggaa
cggctcgacccaggccccccggcagacaaggtcgaatccttcgagagcaatcgcaacctg
ttctacgtcgcgtgctccagaccgaagcgccgattggcgctgttgttcacccagattcta
agcgagctcgcgatggcgaaggtgacagctttgttcggcgaggccaatgtgatcccgctt
ccagcagatcccgcgggcggggccgcgccatga
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