Saccharothrix syringae: EKG83_02385
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Entry
EKG83_02385 CDS
T06258
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
EKG83_02385
09124 Replication and repair
03420 Nucleotide excision repair
EKG83_02385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyi03021
]
EKG83_02385
03400 DNA repair and recombination proteins [BR:
ssyi03400
]
EKG83_02385
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKG83_02385
Transcription machinery [BR:
ssyi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
EKG83_02385
DNA repair and recombination proteins [BR:
ssyi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
EKG83_02385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
QFZ16461
UniProt:
A0A5Q0GRE7
LinkDB
All DBs
Position
complement(511806..513467)
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AA seq
553 aa
AA seq
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MTDGPLIVQSDKTLLLEVDHPLSDDARIAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVVDALVRFSRYPVPQPLLVDVVDTMGRYGRLQLANHPAHGLVLSSLDRAVLEEVL
RNKKVKPMLGARIDDDTVVVHPSERGRLKQLLLKVGWPAEDLAGYVNGEAHPIVLQEDGW
QLRDYQRMAAQAFWAGGSGVVVLPCGAGKTLVGAAAMAEAQATTLILVTNTVAGRQWKRE
LIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRKSKGEYRHLELFDSRDWGLIVYDEV
HLLPAPVFRMTADLQSRRRLGLTATLVREDGQEGDVFSLIGPKRFDVPWRDIEAQGWIAP
AECTEVRVTLTDNERLEYATAEPEERYRLCSTARTKLPVVRAVLDRHPGEPALVIGAYLD
QLESLGEALGAPVIQGSTKNKEREALFDAFRRGELRTLVVSKVANFSIDLPEASVAVQVS
GTFGSRQEEAQRLGRLLRPKGDGRQAHFYSVVARDTLDTDYAAHRQRFLAEQGYAYRIVD
ADDLLGPKLPEVG
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggccccctgatcgtccagtcggacaagaccctgctgctggaggtcgaccac
ccgctgtcggacgacgcccgcatcgccatcgcgcccttcgcggagctggagcgcgccccc
gagcacgtccacacctaccgggtcaccccgctggccctgtggaacgcccgggccgccggc
cacgacgccgagcaggtcgtcgacgccctggtgcgcttctcccgctacccggtgccgcag
ccgctgctggtggacgtggtcgacaccatgggccgctacggccggctccagctggccaac
cacccggcgcacggcctggtgctctcctcgctggaccgcgcggtgctggaggaggtgctg
cgcaacaagaaggtcaagccgatgctcggcgcccgcatcgacgacgacaccgtggtcgtg
caccccagcgagcgcggccggctcaagcagctgctgctcaaggtcggctggcccgccgag
gacctggccgggtacgtcaacggcgaggcgcaccccatcgtgctccaggaggacggctgg
cagctgcgcgactaccagcggatggccgcgcaggcgttctgggcgggcggctccggcgtg
gtcgtgctgccgtgcggcgcgggcaagacgctggtcggcgcggcggccatggccgaggcg
caggcgaccacgctgatcctggtcaccaacacggtggcgggcaggcagtggaagcgggag
ctgatcgcccgcacgtcgctgaccgaggaggagatcggcgagtactccggcgagcgcaag
gagatccgcccggtcaccatcgccacctaccaggtgatcacccgcaagtccaagggcgag
taccggcacctggagctgttcgactcccgcgactggggcctgatcgtctacgacgaggtc
cacctgctgcccgcgccggtgttccggatgacggccgacctgcagtcccggcgccggctc
gggctgaccgcgacgctggtgcgcgaggacggccaggagggcgacgtgttctcgctcatc
gggccgaagcgcttcgacgtgccgtggcgcgacatcgaggcccagggctggatcgcgccg
gccgagtgcaccgaggtccgggtgacgctgaccgacaacgagcgcctggagtacgccacg
gccgagccggaggagcggtaccggctctgctccacggcgcgcaccaagctgcccgtggtc
agggcggtgctggaccggcaccccggcgagccggccctggtgatcggcgcctacctggac
cagctggagtcgctgggcgaggccctgggcgcgccggtgatccaggggtcgacgaagaac
aaggagcgggaggccctgttcgacgccttccggcgcggcgagctgcgcacgctggtggtg
tcgaaggtggcgaacttctccatcgacctgccggaggcgtcggtggccgtgcaggtgtcc
ggcacgttcgggtcgcggcaggaggaggcccagcggctgggccggctgctgcggcccaag
ggcgacggcaggcaggcgcacttctactcggtggtggcgcgcgacacgctggacacggac
tacgccgcccaccggcagcgcttcctggccgagcaggggtacgcctaccggatcgtggac
gccgacgacctgctcgggccgaagctgcccgaggtcggttag
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