Saccharothrix syringae: EKG83_09070
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Entry
EKG83_09070 CDS
T06258
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssyi
Saccharothrix syringae
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssyi03016
]
EKG83_09070
Enzymes [BR:
ssyi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
EKG83_09070
Transfer RNA biogenesis [BR:
ssyi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EKG83_09070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Luciferase
Motif
Other DBs
NCBI-ProteinID:
QFZ17610
UniProt:
A0A5Q0GVY1
LinkDB
All DBs
Position
complement(1915790..1917034)
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AA seq
414 aa
AA seq
DB search
MDVPSDEPTEPTGADPVPLVEPADGVPPVVADAPSLRRAADALAGATGPVAVDTERASGY
RYSQRAYLVQLRRAGAGTVLVDPIALGGRLDPLVEALDGAEWVLHAASQDLPCLAELGLR
PSTLFDTELAGRLAGFERVALGTLVERLLGYRLEKGHGAADWSRRPLPAEWLNYAALDVE
LLIELRDVLEQELKRQGKLEWALEEFEAARTAPLPRPRAEPWRRTSGIHRVRSPRQLAAV
RSLWEARDALARERDIAPGRVLPDSALVEAAVRNPADEPALLALPVFRGRAQRRLVGVWL
GALQRAAALPKSELPEAAQQHDGPPPPNRWADKDPAAAARLAAARTALTAIAEANTLPVE
NLLLPDLVRRTCWQPPADTSPTGVATALREAGARPWQVTLTATALAEALNTAPA
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtaccctccgacgagccaaccgaaccaaccggagctgatccggtgccgctggtg
gaacccgctgacggggtgccaccggtcgtcgccgacgccccgtcgctccggcgtgccgct
gacgcgctcgccggagcgacgggtccggtcgcggtggacaccgagcgagcctcgggctac
cgctactcgcaacgggcctacctggtgcaactgcgccgggcgggcgccgggaccgtgctg
gtcgacccgatcgccctcggcggtcggctcgacccgctggtcgaggcgctggacggggcc
gagtgggtgctgcacgcagcgtcgcaagacctgccgtgcctcgccgaactcggcctgcgc
ccgagcacgttgttcgacaccgagctggcgggcaggctggccggtttcgagcgggtggcg
ctgggcacgctcgtcgagcggttgctcggctacaggttggagaaggggcacggcgcggcc
gactggtcgcgtcggcccctgccggccgagtggctgaactacgccgcgctcgacgtcgaa
ctgctgatcgagctgcgcgacgtgctcgaacaggagctcaagcggcaggggaagctggag
tgggcgctcgaggagttcgaggccgcccgcacggctcccctgccgcgcccgcgcgcggag
ccgtggcgccgcacgtcgggcatccaccgcgtgcgcagcccgcggcaactggccgcggtg
cgctccctctgggaggcccgcgacgccctggcgcgcgagcgcgacatcgcaccgggccgc
gtcctgccggactcggccctggtcgaggccgccgtccgcaaccccgcggacgaaccggcc
ctgctcgccctgcccgtcttccgcggccgggcgcagcgacggctggtcggcgtgtggctg
ggcgcgctccaacgcgccgccgccctgccgaagtccgaactgccggaagcggcccagcag
cacgacggcccgccaccgcccaaccgctgggcggacaaggacccggccgccgcggcccgc
ctggccgccgcccgaacggcgctgaccgccatcgccgaggccaacaccctgccggtggag
aacctgctcctccccgacctggtgcgccgcacgtgctggcagcccccggcggacacctca
cccaccggcgtggccaccgccctccgcgaggccggcgcccgcccctggcaggtcaccctg
accgccacggccctggccgaggccctgaacaccgccccggcctga
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