Saccharothrix syringae: EKG83_13930
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Entry
EKG83_13930 CDS
T06258
Name
(GenBank) helicase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssyi
Saccharothrix syringae
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssyi03009
]
EKG83_13930
03012 Translation factors [BR:
ssyi03012
]
EKG83_13930
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EKG83_13930
5.6.2.5 RNA 5'-3' helicase
EKG83_13930
Ribosome biogenesis [BR:
ssyi03009
]
Eukaryotic type
Other ribosome biogenesis factors
EKG83_13930
Translation factors [BR:
ssyi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
EKG83_13930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
AAA_25
AAA_16
UvrD-helicase
AAA_5
AAA_22
AAA
bpMoxR
nSTAND3
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QFZ18435
UniProt:
A0A5Q0GXN5
LinkDB
All DBs
Position
3052069..3054981
Genome browser
AA seq
970 aa
AA seq
DB search
MRSVQLPLNGVIHLVASAEDDHRLREKTRNHPGLPLSVAQVVAELSASRGGVPATVDEPN
RRNGRRTLLVYGTAWSVRLEPTHSGRGYKVRWVDPLRIRDHHRLARHFLSLCAIGWRHVD
SLHELREGVHSFWPQIEQQWERLVRSQADASTAPALPPHHAAFLDTVEQVVDAGERVAVA
AASGERPYPYRDVAPVGEQRQGTHAVYGFTIGGTGVPEEGAFVQVKGYDEHRGQVVRLDG
RVATVRFDEAVDWKLLPKTGELETTTSTVVFKKQREAITALRDRLTRNPHLLTALVDART
RPLGEAPDTPTEDLDPDQLRAFRRALAVEDLMLVLGPPGTGKTRVISQVAHAAARGDGWT
RPPQRVLVTSHSNRAVDNILPRLSPDLVVVRVGNAGTVTEEGRPYLLDEQARQLRGQVLA
GVDRGLREFADLEIAQKWTDELADRVHALLAVYARVDEAHAGVAAARRDAGGPAQARVDG
LEAVLADLDRRSARVHRAGERVTRVGRIPLLGWWARWRGAALWSQARQLDAARHGHGEEL
RHARQHLEAVTEHAPAVRHAGSVLAQWWEQAEKARESAFLAAHASRAAIGGSEPPPVVRD
TTDPVAVRHDLTALVSWLRARLPLLQARARLLADWHREVSGATTQLHPELIRYAHVVAAT
TIGTASRPELSDVGFDLAIVDEAGQIGTADLLVPLVRARRAVLVGDQQQLPPFLDSEVET
WGRDVGDPRIRALLAQSALEHLVDRLPQVNVVPLTWQRRMPAVIAEFSSRVFYGGRLRTA
GTRVHDDSLFGSPLVFVDTARLPAQQRRERPAGRREHRQNGYHNPAESLLLSRLAAHYDA
TGREWAVIVPYSAQVKAVTAAIVELIGKEAHVRLNVGSVDSFQGGERQVVLYGFTRSNPD
GNVGFLRELRRANVAFTRAKEQLVLVGDLDTLTMARDAGFRDLARALRDHVATAGEIRQY
AEVLNRIGGR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
gtgcgttccgtccagctgcccctcaacggggtgatccacctcgtcgcgtccgcggaagac
gaccaccggctgcgggagaagacgcgcaaccaccccgggctgccgctgagcgtcgcacag
gtggtggccgagctgtcggcctcccgcggcggcgtgcccgcgacggtggacgagcccaac
cggcggaacggcaggcgcacgctgctggtctacggcacggcctggtcggtccggctcgaa
cccacccactccggacgcgggtacaaggtcaggtgggtcgacccgctccggatcagggac
caccaccggctcgcccggcacttcctgtcgctgtgcgcgatcggctggcggcacgtggac
agcctgcacgaactgcgcgagggcgtgcactcgttctggccgcagatcgagcagcagtgg
gaacggctcgtgcggtcgcaggccgacgcgtcgacggcccccgccctcccgccccaccac
gccgcgttcctcgacaccgtcgaacaggtcgtcgacgcgggcgagcgggtcgccgtggcg
gccgcgagcggcgagcggccctacccgtaccgcgacgtcgcaccggtcggcgaacagcgg
cagggcacgcatgccgtgtacggcttcacgatcggcgggaccggcgtgccggaggagggc
gcgttcgtccaggtgaagggctacgacgagcaccgcggccaggtggtgcggctggacggc
cgggtggcgaccgtccggttcgacgaagccgtggactggaagctgctgccgaagaccggc
gagctggagaccaccacgagcacggtggtgttcaagaagcagcgagaggcgatcaccgcc
ctgcgcgaccggctgacgcgcaacccgcacctgctgaccgccctggtcgacgcgcgcacc
cggccgctcggcgaggcgccggacaccccgaccgaagacctggacccggaccagctccgg
gcgttccgcagggccctggccgtcgaggacctgatgctggtgctcggcccgccgggcacc
ggcaagacgcgggtgatcagccaggtcgcgcacgcggcggcacgcggggacgggtggacg
cgaccgccgcagcgggtgctggtcacctcgcactccaaccgggctgtggacaacatcctg
cccaggctgtcaccggacctcgtggtggtgcgggtcggcaacgccggcacggtcaccgag
gaaggccgcccctacctgctggacgagcaggcgcggcagttgcgcggccaggtgctcgcg
ggcgtcgaccgaggactgcgcgagttcgccgacctggagatcgcgcagaagtggaccgac
gagctggccgaccgcgtgcacgccctgctggccgtgtacgcccgcgtggacgaggcacac
gccggcgtcgcggcggcccgacgcgacgccgggggccccgcccaggcccgtgtggacggg
ctggaggccgtgctggccgatctcgaccggcggtcggcacgcgtgcaccgggcgggcgaa
cgcgtcacgcgagtcggccggatcccgctgctcggctggtgggcccggtggcggggcgcc
gcgctctggtcgcaggcccggcaactcgatgcggcccggcacggccatggcgaggaactg
cgtcacgcccggcagcacttggaggccgtcaccgagcacgcgcccgcggtgcgccacgcg
ggttcggtgctggcgcagtggtgggaacaggcggagaaggcgcgggaatccgcgttcctc
gccgctcatgcgtcgcgtgcggcgatcggcggctccgagccgccacccgtggtccgcgac
accacggacccggtggcggtccggcacgacctgacggccctcgtgtcgtggctgcgagcg
cgactgccgctgctccaggcccgtgcgcgcctgctcgcggactggcaccgggaggtttcc
ggggccaccacgcaactgcaccccgagctgatccgctacgcccacgtcgtggcggccacc
acgatcggcacggcgtcccgcccggagctgtcggacgtgggcttcgacctggcgatcgtc
gacgaggccgggcagatcggcaccgccgacctgctggtgccgctggtgcgggcccggcgg
gcggtgctggtcggggaccagcagcagctaccaccgttcctcgactccgaggtcgagacc
tgggggcgggatgtgggagacccgcgcattcgcgccctgctcgcgcagagcgcgctggaa
cacctggtggaccgcctgccgcaggtgaacgtcgtgccgctgacgtggcagcggcggatg
cccgcggtcatcgccgagttcagctcgcgggtcttctacggcggcaggttgcgcaccgcc
ggcacgcgcgtgcacgacgactccctgttcggcagcccgctggtgttcgtcgacaccgcg
cggctgcccgcgcagcagcggcgtgaacgaccggccggccggcgggagcaccggcagaac
ggctaccacaacccggccgaatcgctgttgctgtcgcggttggccgcgcactacgacgcg
acgggccgcgagtgggcggtgatcgtgccctacagcgcgcaggtcaaggcggtcaccgcc
gcgatcgtggagctgatcggcaaggaggcccacgtgcggctgaacgtgggctccgtcgac
tcgttccagggtggcgagcgccaggtggtcctctacggcttcacccgcagcaacccggac
ggcaacgtgggcttcctgcgcgagctgcggcgcgccaacgtcgcgttcacccgtgccaag
gagcagctcgtgctcgtcggtgacctggacacgttgacgatggcgcgggacgccgggttc
cgcgacctggcgcgggcgctgcgcgatcacgtggcgacggcgggcgagatcaggcagtac
gcggaagtcctcaaccggatcggtgggcgatga
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