Saccharothrix syringae: EKG83_14135
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Entry
EKG83_14135 CDS
T06258
Name
(GenBank) TIR domain-containing protein
Organism
ssyi
Saccharothrix syringae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
Ge1_WD40
PD40
NBCH_WD40
Pentapeptide
PROPPIN
eIF2A
Pentapeptide_4
NACHT
TIR_2
AAA_22
AAA_16
WDR54
Motif
Other DBs
NCBI-ProteinID:
QFZ18466
UniProt:
A0A5Q0GWH3
LinkDB
All DBs
Position
complement(3099517..3104145)
Genome browser
AA seq
1542 aa
AA seq
DB search
MRRIPPATARARLLGVSLSSIDREAMGVLLDAMGTADELSVEQVQRLLFAQRTPAAATKA
LERLVKLVNTAAVDESVDLEVQVHGAKRSGARGRTLSFWAERVDVVGAPLREHEAVRDVL
IEDRQATVLGPRRIVLCNATADDVTAGRLWDLLFEALGGEQHGIAVWRSDKDVLAGDDRE
KQLRMEVAGSELVVAAVSNAWYAQPALNETLRAYSGSSGPTVMPVLLRPTSSRAGAFEPK
AVYPGTPQGVPFNDLKSQSARDKWVNGLVEHIHRQLDRVSAKPLDMGTKDRRMLKETCGD
QFFDLHGRPGGMDPDTAIGAHDQERRVEDVVAYLMDWARDPDSAPLAALLGEYGTGKTIT
CQELTERLQTPPAPLRPEPLYFDLRRLGNLSNVVPTLPEILTECINRGWAPGDTRLPSGE
EVIARARTVPTLFVIDGLDEVLVRLDAAQGIAFTHELLKLRPIRGKGKGTVHAPFAGVHT
KVLLSCRTHYFRSLREQSRHFLEHDRDLAAAEDYVALMLLPLTDEQIRGYLDKALPDQDV
TQVMDMLGAVHDLSDLATRPYTLAKVAAQIPFIEDRLSQQRPVYAATIYRQVLRDWLTRD
LGKHRLRPEHKLTLMARLAAWSWKRGDRRVDSADLDDWLDEQLATDPVLGRRYGSISRDQ
LEEDLRTATFVVRNDHNGPDRPDFQFAHSSIHEYFLAQYLCDAIRDDRREDWCLPIPSAE
TLDFLGQLIADDDDQEALRATLNRWRTSYLEGASELWLRYALHARAHNRPHPTLVGSDLS
GARLRGWQFIGTRANPLVFTAATLAGADLRETRWDHVNLTHTSLQAARLERAVLHKTTIV
DASLRDADLAGAFLRHCRLDNTDLTGANTNQLRHVHSGDYLPTPLPPARTRLQALTGHSG
SVWGVAFSPDGTQLATAGSSDGTARIWNATTGETLHTLTTHSGSVWGVAFSPDGTQLATA
GSSDGTARIWNATTGETLHTLTTHSGSVWGVAFSPDGTQLATAGSSDGTARIWNATTGET
LHTLTTHSGSVWGVAFSPDGTQFATASDDGARIWNATTGETLHTLTGHTDSVWGVAFSPD
GTQLATASDDGARIWNATTGETLHTLTGHSGSLRDVAFSPDGTQLATASSDGTARIWNAT
TGETLHTLTGHTDWVRGVAFSPDGTQLATASSDGTARIWNATTGETLHTLTTHIGWVWGV
AFSPDGTQLATASDDGARIWNATTGETLHTLTGHSGSLRDVAFSPDGTQLATAGSDGTAR
IWNATTGETLHTLTTHSDSVWDVAFSPDGTQLATASDDGTARIWNATTGETLHTLTGHTD
WVRGVAFSPDGTQLATAGSDGTARIWNATTGETLHTLTTHSDSVWDVAFSPDGTQLATAS
DDGTARIWNATTGETLHTLTGHTGSVWGVAFSPDGTQLATAGSDGTARIWNATTGETLHT
LTGHTDWVRDVAFSPDGTQLATASDDGTTRIWNVDARQPELLMAAFTKTSTASWSQVRNT
LLSATGDAWLFLRAACLDSHNRLVDLQPYELYYSESASAVDS
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggatacctcccgccacggctcgcgcccggttgctcggggtgtccttgagctcg
atcgaccgcgaggcaatgggcgtgctgctggacgcgatggggacggcagacgagttgtcc
gtggaacaggtgcagcgtctattgttcgcccagcggaccccggcggccgcgacgaaggcg
ttggagcgcttggtcaagctggtgaacaccgccgcagtagacgagagtgtggacctcgag
gtccaggtccacggcgcgaagagatcgggcgcgcgtggccgcacgctgagcttctgggcc
gagcgcgtcgacgtggtcggcgcacctctgcgtgagcacgaggcggttcgtgacgtactc
atcgaggaccggcaggcgactgtgctcgggccgagacggatcgtgttgtgcaacgccacg
gcggacgacgttacagctggacgcctgtgggacctgctgttcgaggcattgggcggtgag
cagcacggaatcgccgtgtggcggtccgataaggacgtgctggccggtgacgaccgggaa
aagcaactgcgcatggaggtggcgggtagcgaactggtggtcgccgcggtgagcaacgcc
tggtacgcgcaacctgcgctcaacgagacgctgcgtgcctacagcgggtcctccggcccg
acggtgatgccggtgctgctgcggccgacgagctcccgcgcgggtgcgttcgaacccaaa
gctgtctaccctggcacgcctcagggcgtcccgttcaatgacctcaagagccagtctgcc
cgggacaagtgggtgaatggccttgtcgagcacatccaccgccagctcgaccgcgtgagc
gcgaagccgctcgacatgggcacgaaagaccggcgcatgctcaaggagacgtgcggggac
cagttcttcgacctgcacggccgtcccggcggcatggatccggacacggccatcggcgcg
cacgaccaggagcggcgggtcgaggacgtcgtggcgtacctcatggattgggcacgtgat
ccggacagtgcgccgctcgccgcgttgctgggcgagtacggcaccggtaagacgatcacc
tgccaggagttgaccgaacggctgcaaaccccgccagccccgttgcggcccgagccgctg
tacttcgacctccggcgtctcgggaacctgagcaacgtggtgccgaccctgcccgaaatc
ctgaccgagtgcatcaaccgtggttgggcgccgggtgacacgcggctaccgtcgggggaa
gaggtcatcgcacgggccaggacggtgcccaccctgttcgtcatcgacggtttggacgag
gtcctggtcaggctcgacgccgcgcaaggtatcgccttcacccatgagttgctcaagctc
cggccgatccgcgggaaaggcaagggcacggttcacgccccgttcgccggggtgcacacc
aaggttctgctgtcctgccggacccactacttccggtcgctgcgggaacagtccaggcac
ttcctcgagcacgaccgtgatctcgcagccgccgaggactacgtcgcgctgatgttgttg
ccgttgaccgacgagcagatccgcgggtacctggacaaggcgctgccggaccaggacgtc
acgcaggtgatggacatgctgggagcggtacacgacctgtccgacctggccacgcgcccc
tacacgctggccaaggtcgccgcgcagatcccgttcatcgaagaccgcctctcgcagcaa
cgcccggtgtacgcggccacgatctaccggcaggtcttgcgcgactggctcacacgagac
ctcggcaagcaccgtctgcgccccgagcacaagctcaccttgatggctcgactggcagca
tggtcgtggaagcgtggtgaccggcgggtcgacagcgccgacctggacgactggctcgat
gaacaactcgccacagaccccgtgctcggcagacgctacggaagcatctcacgcgaccaa
ctcgaggaggacctacgcaccgccacgttcgtggtccgcaacgaccacaacgggcctgac
cgccccgactttcaattcgcgcacagctccatccacgagtacttcctcgcccagtacctg
tgcgacgcgatacgcgatgaccgccgtgaggactggtgccttcccatcccgtcggcggag
acgttggacttcctgggccagttgatcgccgacgacgacgatcaagaggcgctccgggcc
accctgaaccggtggcgtacgtcgtacttggaaggagccagcgagctgtggctccggtac
gcgctccacgcccgcgcacacaaccgcccgcatcccacgctggtcggcagcgatctcagc
ggtgcccggctacggggctggcagttcatcggtacgagggccaacccgctcgtgttcact
gccgccacgctggccggagcagatctgcgcgaaacccgctgggaccacgtcaacctcacc
cacacaagccttcaggccgcccgcctcgaacgagccgtactgcacaagaccacaatcgtc
gatgcaagcctgcgcgacgccgacctcgccggtgcgttcctccgccactgccgcctggac
aacacagacctgaccggcgcgaacaccaaccaactccgtcacgttcacagcggcgactac
ctaccgaccccgctgccgcccgcccggacccgcctccaggcactcaccggacacagcggc
tcggtctggggtgtcgcgttcagcccggacggaacccaactcgccaccgccggcagcagc
gacggcaccgcacggatctggaacgcgaccaccggcgagaccctgcacaccctcaccaca
cacagcggctcggtctggggtgtcgcgttcagcccggacggaacccaactcgccaccgcc
ggcagcagcgacggcaccgcacggatctggaacgcgaccaccggcgagaccctgcacacc
ctcaccacacacagcggctcggtctggggtgtcgcgttcagcccggacggaacccaactc
gccaccgccggcagcagcgacggcaccgcacggatctggaacgcgaccaccggcgagacc
ctgcacaccctcaccacacacagcggctcggtctggggtgtcgcgttcagcccggacgga
acccaattcgccaccgccagcgatgacggcgcacggatctggaacgcgaccaccggcgag
accctgcacaccctcaccgggcacaccgactcggtctggggtgtcgcgttcagcccggac
ggaacccaactcgccaccgccagcgatgacggcgcacggatctggaacgcgaccaccggc
gagaccctgcacaccctcaccgggcacagcggctcgctccgggatgtcgcgttcagcccg
gacggaacccaactcgccaccgccagcagcgacggcaccgcacggatctggaacgcgacc
accggcgagaccctgcacaccctcaccgggcacaccgactgggtcaggggtgtcgcgttc
agcccggacggaacccaactcgccaccgccagcagcgacggcaccgcacggatctggaac
gcgaccaccggcgagaccctgcacaccctcaccacacacatcggctgggtctggggtgtc
gcgttcagcccggacggaacccaactcgccaccgccagcgatgacggcgcacggatctgg
aacgcgaccaccggcgagaccctgcacaccctcaccgggcacagcggctcgctccgggat
gtcgcgttcagcccggacggaacccaactcgccaccgccggcagcgacggcaccgcacgg
atctggaacgcgaccaccggcgagaccctgcacaccctcaccacacacagcgactcggtc
tgggatgtcgcgttcagcccggacggaacccaactcgccaccgccagcgatgacggcacc
gcacggatctggaacgcgaccaccggcgagaccctgcacaccctcaccgggcacaccgac
tgggtcaggggtgtcgcgttcagcccggacggaacccaactcgccaccgccggcagcgac
ggcaccgcacggatctggaacgcgaccaccggcgagaccctgcacaccctcaccacacac
agcgactcggtctgggatgtcgcgttcagcccggacggaacccaactcgccaccgccagc
gatgacggcaccgcacggatctggaacgcgaccaccggcgagaccctgcacaccctcacc
gggcacaccggctcggtctggggtgtcgcgttcagcccggacggaacccaactcgccacc
gccggcagcgacggcaccgcacggatctggaacgcgaccaccggcgagaccctgcacacc
ctcaccgggcacaccgactgggtccgggatgtcgcgttcagcccggacggaacccaactc
gccaccgccagcgatgacggcaccacacggatctggaacgtggacgcaagacagccagaa
ttgctgatggcagccttcaccaaaacctcaacggcgtcatggtcacaggtcaggaacacg
ttgctgtccgcaaccggtgatgcctggctatttctgcgtgcagcatgcctcgacagccat
aaccgcctagtggaccttcagccatacgaactctattacagcgagtcagcttcagccgtg
gactcctag
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