Saccharothrix syringae: EKG83_29625
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Entry
EKG83_29625 CDS
T06258
Name
(GenBank) rhamnogalacturonan lyase
KO
K18197
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ssyi
Saccharothrix syringae
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
EKG83_29625
Enzymes [BR:
ssyi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
EKG83_29625
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Gene cluster
GFIT
Motif
Pfam:
RGL11_C
CBM_2
RGI_lyase
FG-GAP_3
FG-GAP
Motif
Other DBs
NCBI-ProteinID:
QFZ20991
UniProt:
A0A5Q0H452
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All DBs
Position
complement(7006945..7009239)
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AA seq
764 aa
AA seq
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MDRFCGESFQDPSALPGTVLGALPEPGDGGATVLSNVRVREVAAVTAISALAGGLLVAGT
ASAAPGCEVDYVVQNKWQGGFSANVTVRNLGDPVDGWRLAWTFPGAERYGEGWNAVFAAS
GASVTASNVDWNRAIPTGGAVSFGFNGTTSGTEVGTPGSFALNGTTCTGGVDPTTTTTDQ
GPGPEPGDPTGRKQVERLDRGVISVRSGSNNLVSWRLLAGDPRDVGFNVYRGGTKVNSSP
ITASTNYLDPGAPAGASYTVRAVVGGAEQPASPASLSFGSGYLDVPIQSPGSGYSANDAS
VGDADGDGQYEIFLKWYPDNAKDNSQAGVTGNTYLDAYRLNGTRLWRIDLGRNIRSGAHY
TQFQVYDYDGDGRAEVAMKTADGTRDGRGTVIGSASADHRNGDGYVLAGPEFLTMFNGLT
GAAVSTVNYDPPRGTVSSWGDSYGNRVDRFLAGTAYLDGARPSLIMARGYYTRAVIAAWD
FRNGQLTKRWTFDSNASGNSTYAGQGNHSLTVGDVDQDGRDEIVYGAAAIDDNGRGLWNT
RFGHGDAAHLGDLDPSRPGLEYYKVSENGSQPGSWFADARTGQVLWRTAPAGDNGRGVSG
DVYAGSPGAESWSSADSQIRNTRGEAVGRKPSSANHLIWWDGDPTRELLDGTHVDKYGTG
GDTRLLSASGVHSNNGTKANPSLTADLLGDWREEAIWPTTDNRALRIYATPNQTDRRIPT
LMHDTTYRVAIAWQNTAYNQPPHPSFHIGNGMATPPWPDVHYAG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcttctgtggtgaatcgtttcaagacccgagcgctctcccgggcactgttctg
ggagcgctcccagaacctggagacggaggagcaacggtgctctccaatgtccgagtgcgc
gaggtcgccgccgtcacggcgatcagcgcactggcaggcggcctcctggtcgcgggcacg
gcgtcggccgcgcccggctgcgaggtcgactacgtggtgcagaacaagtggcagggcggg
ttctccgccaacgtcacggtcaggaacctgggcgacccggtcgacgggtggcgcctggcg
tggaccttccccggtgccgagcgctacggcgagggctggaacgcggtgttcgccgcctcg
ggcgcgagcgtgaccgcgtccaacgtggactggaaccgggcgatcccgaccggtggcgcg
gtgtcgttcggcttcaacggcacgaccagcggcaccgaggtcggcacacccgggtcgttc
gcgctcaacggcaccacctgcacgggcggtgtcgatcccaccacgacgaccaccgaccag
gggcccggccccgagccgggcgaccccaccgggcgcaagcaggtggagcggctggaccgg
ggcgtgatcagcgtccggtcgggcagcaacaacctggtgagctggcggttgctggccggc
gacccgagggacgtggggttcaacgtctaccggggcggcacgaaggtcaactcctcaccg
atcaccgcctcgaccaactacctcgaccccggcgccccggcgggcgcctcgtacaccgtg
cgggcggtggtgggcggtgccgagcagcccgcctcaccggcgtccctgtcgttcggctcg
ggctacctggacgtgccgatccagtcgccgggcagcggttacagcgccaacgacgcgagc
gtcggcgacgccgatggcgacgggcagtacgagatcttcctgaagtggtacccggacaac
gccaaggacaactcgcaggccggtgtcacgggcaacacctacctcgacgcctatcgactg
aacggcacccggctgtggcgcatcgacctgggccgcaacatccgctccggcgcgcactac
acccagttccaggtctacgactacgacggcgacggccgggccgaggtggcgatgaagacc
gccgacggcacccgcgacggccgcggcaccgtcatcggcagcgcgagcgccgaccaccgc
aacggcgacggctacgtgctggccggcccggagttcctgaccatgttcaacggcctgacc
ggcgcggccgtgtcgacggtgaactacgacccgccgcgcggcacggtctcgtcctggggc
gacagctacggcaaccgggtcgaccggttcctggcgggcaccgcgtacctggatggcgcc
cgcccgtcgttgatcatggcgcgcggctactacacccgcgcggtgatcgcggcctgggac
ttccgcaacgggcagctcaccaagcgctggacgttcgactccaacgcctcgggcaacagc
acctacgcgggccagggcaaccactcgctgaccgtcggtgacgtcgaccaggacggccgg
gacgagatcgtctacggcgccgccgcgatcgacgacaacggccgcggcctgtggaacacc
cggttcggccacggcgacgccgcccacctgggcgacctcgacccgtcgcggccgggcctg
gagtactacaaggtctcggagaacggcagccagcccggctcgtggttcgccgacgcccgc
accggccaggtgctgtggcggaccgcgcccgcgggcgacaacggccgcggcgtgtccggt
gacgtctacgcgggcagccccggcgccgagtcctggtccagcgccgactcccagatccgc
aacaccaggggcgaggcggtcggccgcaagccgtcctcggcgaaccacctgatctggtgg
gacggcgaccccacccgcgaactgctcgacggcacccacgtcgacaagtacggcaccggc
ggcgacacccgcctgctgtccgcgtcgggcgtgcactccaacaacggcaccaaggccaac
ccgtcgctgaccgcggacctcctgggcgactggcgcgaggaggccatctggcccaccacg
gacaaccgggccctgcgcatttacgccacgccgaaccagaccgaccggcgcatcccgacc
ctgatgcacgacaccacgtaccgggtcgccatcgcctggcagaacaccgcctacaaccag
cccccgcacccgagcttccacatcggcaacggcatggccaccccgccgtggccggacgtc
cactacgccggctga
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