Saccharothrix syringae: EKG83_33990
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Entry
EKG83_33990 CDS
T06258
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKG83_33990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyi03019
]
EKG83_33990
03009 Ribosome biogenesis [BR:
ssyi03009
]
EKG83_33990
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKG83_33990
Messenger RNA biogenesis [BR:
ssyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKG83_33990
Ribosome biogenesis [BR:
ssyi03009
]
Prokaryotic type
rRNA helicases
EKG83_33990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFZ21744
UniProt:
A0A5Q0H716
LinkDB
All DBs
Position
8228758..8230437
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AA seq
559 aa
AA seq
DB search
MSDEPDDRTSFADLGLRPELLRALAGLGYEEPTPIQREAIAPLTEGRDLLGQAATGTGKT
AAFALPVLERMGDGGRTERAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPI
GRQLRVLEQGVDVVVATPGRAVDHLNRGTLKLEKLEVVVLDEADEMLDMGFAEDLDSILS
EAPADRQTVLFSATMPPHIDRLARRHLKDPVRITIGREQTEPGEAPRVRQSAYVVPRAHK
PAALGRILDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLR
NGTADLLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPR
EHGMLKTIERVTKQRIQVEKVPTIADLRARRLELTRAALHESLLEDDLEGFRVVVETLAD
EFDVMMVALAAVKLAHEATGAAADEEEIPEYVPRSGDRRGRDAAGGERRERRSRRPTAGM
TRLFVGAGRSAGIRPQDLVGAIAGEARLNGRDIGAIEIADRFSLVEVPEGAAQQVIASLR
GATIKGRKVTVRREREDQR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagcccgacgaccggaccagcttcgccgacctcgggttgcgccccgaactg
ctccgcgccctcgccggcctgggttacgaggagccgacccccatccagcgcgaggccatc
gccccgctcaccgagggccgcgacctgctcggccaggccgccaccggcaccggcaagacc
gccgcgttcgcgctgcccgtgctggagcggatgggcgacggcgggcggaccgagcgggcg
ccgttcgccctcgtcctggtgccgacgcgcgaactggcggtgcaggtctccgaggccgtg
caccggtacgggcgcgagctgggcgcgcgggtgctgccgatctacggcggtcagccgatc
gggcgacagctgcgggtgctggagcagggcgtggacgtcgtggtggccacgccgggccgc
gccgtcgaccacctcaaccggggcacgctgaagctggagaagctggaagtcgtcgtgctc
gacgaggccgacgagatgctcgacatgggcttcgccgaggacctggactcgatcctgtcc
gaggcgccggccgaccggcagaccgtgctgttctccgccaccatgccgccgcacatcgac
cggctggcccggcggcacctcaaggacccggtgcgcatcaccatcggccgcgagcagacc
gagcccggcgaggcaccgcgggtgcggcagagcgcgtacgtcgtgccgcgcgcccacaag
ccggccgcgctgggccgcatcctggacgtggaggcgccgaccgccgcgatcgtgttctgc
cgcacccgcgacgaggtcgaccagctcaccgagaccctcaacggccgcggttaccgggcg
gagtcgctgcacggcggcatcagccaggagcagcgcgaccgcgtgatggcgcggttgcgc
aacggcacggcggacctgctggtcgccaccgacgtcgccgcccgcggcctggacgtcgag
cagctgacccacgtggtcaactacaacgtgccgtccgcgccggagtcctacgtgcaccgc
atcggccgggtcgggcgggcgggccgcgagggcgtggcgatcaccctcgccgagccgcgc
gagcacggcatgctcaagaccatcgagcgggtgaccaagcagcgcatccaggtcgagaag
gtgcccaccatcgccgacctgcgggcccgccggctggagctgacccgcgccgcgctgcac
gagagcctgctggaggacgacctggagggcttccgggtcgtggtggagacgctggccgac
gagttcgacgtgatgatggtcgcgctggccgcggtcaagctcgcgcacgaggccaccggc
gcggcggcggacgaggaggagatccccgagtacgtgccgaggtccggcgaccgccgcggc
cgggacgccgccggcggcgagcgccgggagcgccgttcccgccggccgaccgccggcatg
acccgcctgttcgtgggcgcgggccgcagcgccggcatccgcccccaggacctggtgggc
gcgatcgccggcgaggccaggctcaacggccgcgacatcggcgcgatcgagatcgccgac
cgcttctccctggtcgaggtccccgagggcgccgcccagcaggtgatcgcttccctacgc
ggcgccaccattaagggccgcaaggtgaccgtccgccgcgaacgcgaagaccagcgctga
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