Saccharothrix syringae: EKG83_39090
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Entry
EKG83_39090 CDS
T06258
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKG83_39090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyi03019
]
EKG83_39090
03016 Transfer RNA biogenesis [BR:
ssyi03016
]
EKG83_39090
Enzymes [BR:
ssyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EKG83_39090
Messenger RNA biogenesis [BR:
ssyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EKG83_39090
Transfer RNA biogenesis [BR:
ssyi03016
]
Prokaryotic type
tRNA degradation factors
EKG83_39090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
S1_RRP5
MUG2_C
Motif
Other DBs
NCBI-ProteinID:
QFZ22639
UniProt:
A0A5Q0H8W8
LinkDB
All DBs
Position
complement(9363455..9365704)
Genome browser
AA seq
749 aa
AA seq
DB search
MTDIEVHETSAVIDNGRFGTRTIRFETGRLARQAAGSVVAYLDDDTMLLSATTASKQPKE
HFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVDGLRNEIQ
VVITVMSLNPADLYDVVAINAASASTQLAGLPFSGPIGGVRVALIEGQWVAFPTHEQLGK
AVFDMVVAGRVVGDDVAIMMVEAEATEHVIDLVGEGAQAPTEEVVAAGLEAAKPFIKALC
DAQAQLARVAAKATGEFPTYPAYQPDAYEAVEQAASGELAQALTIAGKQERENRIDEVKA
SVLEKLAEQFEGREKEVGAAFRSLTKKLVRQRILRDKVRIDGRGLTEIRSLSAEVELIPR
AHGSALFERGETQILGVTTLNMLRMEQQIDSLSPETHKRYLHHYNFPPFSTGETGRVGSP
KRREIGHGALAERALVPVLPKREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVSGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPSDVLAGALNQARDARLTILEVMAEAIDRPDEMSPFAPRVTSVKIPTDKIGEVIGPKG
KMINSITEQTGADISIEDDGTIYVGAADGPSAEAAIGMINAIANPQLPKVGERFLGTVVK
TAAFGAFVSLLPGKDGLIHISKLGNGKRIGKVEDVVKVGDKLRVEIADIDQRGKISLVLV
NEDADAPKADEAQADNPAQDAAPAEASAE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgacggacatcgaggtccacgagacttcagccgtgatcgacaacggtcggttcggcacc
cgcaccatccgcttcgagacgggccggctggcccgccaggccgcgggcagcgtcgtcgcc
tacctggacgacgacaccatgctgctgtcggccaccacggcctcgaagcagcccaaggag
cacttcgacttcttccccctcacggtggacgtcgaggagcgcatgtacgccgcgggccgc
atccccggctcgttcttccgccgcgagggtcgcccgtcgaccgacgcgatcctgacctgc
cgcctgatcgaccggccgctgcgcccgtccttcgtggacggcctgcgcaacgagatccag
gtcgtcatcacggtgatgagcctgaacccggccgacctgtacgacgtggtggcgatcaac
gccgcgtccgcgtccacgcagctggccggcctgccgttctccggcccgatcggcggcgtc
cgggtggcgctgatcgagggccagtgggtggcgttcccgacccacgagcagctcggcaag
gccgtgttcgacatggtcgtggccggccgcgtggtcggtgacgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagcacgtgatcgacctggtcggcgagggcgcgcaggcgccc
accgaggaggtcgtcgcggcgggcctggaggcggccaagccgttcatcaaggccctgtgc
gacgcgcaggcgcagctcgcgcgggtggccgccaaggcgaccggcgagttcccgacctac
ccggcctaccagcccgacgcctacgaggccgtcgagcaggccgcgtcgggcgagctggcc
caggcgctgaccatcgcgggcaagcaggagcgcgagaaccgcatcgacgaggtcaaggcg
tcggtgctggagaagctggccgagcagttcgagggccgggagaaggaggtcggcgccgcg
ttccgctcgctgaccaagaagctggtccgccagcgcatcctgcgcgacaaggtgcgcatc
gacggccgcggcctgaccgagatccgctcgctgtccgccgaggtcgagctgatcccgcgg
gcgcacggctcggcgctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctg
aacatgctgcgcatggagcagcagatcgactcgctgtcgccggagacgcacaagcgctac
ctgcaccactacaacttcccgccgttctccaccggtgagaccggccgcgtgggctcgccc
aagcgccgcgagatcggccacggcgcgctggccgagcgggccctggtgcccgtgctgccc
aagcgcgaggagttcccgtacgcgatccgccaggtctccgaggcgctgggctcgaacggc
tcgacctcgatgggctcggtctgcgcgtccacgatgtcgctgctcaacgcgggcgtgccg
ctgaaggcgccggtgtcgggcatcgccatgggcctggtctccgacgaggtcgacggcaag
accgagtacgtggcgctgaccgacatcctcggtgccgaggacgcgttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtgaccgcgctccagctcgacaccaagctggac
ggcatcccgtccgacgtgctggcgggcgccctgaaccaggcccgcgacgcgcgcctgacc
atcctggaggtcatggccgaggccatcgaccgcccggacgagatgagcccgttcgcgccg
cgcgtgacctcggtgaagatcccgaccgacaagatcggcgaggtcatcggccccaagggc
aagatgatcaactcgatcaccgagcagaccggcgccgacatctccatcgaggacgacggc
acgatctacgtgggcgcggccgacggcccgtccgccgaggccgcgatcggcatgatcaac
gccatcgccaacccgcagctgccgaaggtgggcgagcgcttcctgggcaccgtggtcaag
accgcggcgttcggcgcgttcgtgtccctgctgccgggcaaggacggcctgatccacatc
tccaagctgggcaacggcaagcgcatcggcaaggtcgaggacgtcgtcaaggtcggcgac
aagctccgcgtggagatcgcggacatcgaccagcgcggcaagatcagcctcgtgctggtc
aacgaggacgccgacgcgcccaaggcggacgaggcccaggccgacaacccggcccaggac
gccgctccggcggaggcttcggccgagtga
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integrated database retrieval system
