Symphalangus syndactylus (siamang): 129458832
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Entry
129458832 CDS
T10134
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X2
KO
K14409
protein SMG7
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129458832 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129458832 (SMG7)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129458832 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
129458832 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
129458832
NCBI-ProteinID:
XP_055091090
LinkDB
All DBs
Position
12:complement(39157418..39240051)
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AA seq
1216 aa
AA seq
DB search
MRNWMFLQIVIVGENVSFKSQMRTENLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWT
SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANL
SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC
QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR
SIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP
LREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQL
LALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWP
WLISLLNSFHPHEEDLSSTSATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
RRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETSA
IESLAADGSPGLKSVLSTSRNLSNNCDTGEKPVVTFKENIKPREVNRDQGRSFPPKEVRR
DYSKGITVTKNDGKKDNNKRKTETKKCTLEKLQETGKQNVAVQVKSQTELRKTPVSEARK
TPVTQTPTQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSV
PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQP
TAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLG
KIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYW
DSSYSMADNRSVMAQQANIDRRGKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLA
ALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQ
ERYPNNSMFNEVYGKNLTSSSKAELSPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPAS
QSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYL
SATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQ
QKQKQQRGQGTMNPPH
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattggatgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcc
cagatgaggaccgaaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcag
gcagaagtcctgaaggctgacatgacagattctaagctgggtccagctgaagtctggaca
tccaggcaggctctgcaggacctgtaccagaaaatgctagtcactgatttggaatacgct
ttagacaagaaagtagaacaggatctctggaatcacgcctttaagaatcagatcacaaca
ctacaaggccaggcaaagaatcgagcaaatccgaatcggagtgaagttcaggcaaacctt
tctctgttcctagaggcagctagtggcttctatactcagttattacaagaactgtgtaca
gtatttaatgtagatttaccatgccgtgtgaagtcttcccaattgggaattatcagcaat
aaacagacgcataccagcgccatagtgaagccacagtctagctcctgttcctatatctgc
cagcactgcctcgtccaccttggagacatcgctcgatacagaaaccagaccagccaggca
gagtcctactataggcatgcagctcagcttgtcccctccaatggtcagccttataatcag
ttggctatcttagcttcttccaaaggagaccatctgaccacaattttctactactgcaga
agcattgctgtgaagttccctttcccagctgcctccactaatctgcaaaaagcactttct
aaagcactggaaagccgagatgaggtgaaaaccaagtggggtgtttctgacttcatcaag
gcctttattaaattccacggtcatgtgtacctgagtaagagcttggaaaagttgagccct
cttcgagagaaattggaagaacagtttaagaggctgctattccaaaaagctttcaactct
cagcagttagttcatgtcactgtcattaacctgtttcaacttcatcaccttcgtgacttt
agcaatgaaaccgagcagcacagttatagccaagatgagcagctatgttggacacagttg
ctggccctctttatgtcttttcttggcatcctgtgcaagtgtcctctacagaatgagtct
caggaggagtcctacaatgcctatcctcttccagcagtcaaggtctccatggactggcta
agactcagacccagggtctttcaggaggcagtggtggatgaaagacagtacatttggccc
tggttgatttctcttctgaatagtttccatccccatgaagaggacctctcaagtactagt
gcgacaccacttccagaggagtttgaattacaaggatttttggcattgagaccttctttc
aggaacttggatttttccaaaggtcaccagggtattacaggagacaaagaaggccagcaa
cgacgaatacgacagcagcgcttgatctctataggcaaatggattgctgataatcagcca
aggctgattcagtgtgaaaatgaggtagggaaattgttgtttatcacagaaatcccagaa
ttaatactggaagaccccagtgaagccaaagagaacctcattctgcaagaaacatctgcg
atagagtcgctggctgcagatgggagcccagggctaaaatcagtgctatctacaagccga
aatttaagcaacaactgtgacacaggagagaagccagtggttaccttcaaagaaaatatt
aagccacgagaagtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagg
gactatagcaaaggaataactgtaactaagaatgatggaaagaaggacaacaacaagagg
aaaactgaaaccaagaaatgcaccttagaaaagttacaggaaacaggaaagcagaatgtg
gcagtgcaggtaaaatcccagacagaactaagaaagactccagtgtctgaagccagaaaa
acacctgtaactcaaaccccaactcaagcaagtaactcccagttcatccccattcatcac
cctggagccttccctcctcttcccagcaggccagggtttccacccccaacatatgttatc
ccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtttctgtc
ccaggaacctttcttcagcctacagctcactctccagcaggaaaccaggtgcaagctggg
aaacagtcccacattccttacagccagcaacggccctctggaccagggccaatgaaccag
ggacctcaacaatcacagccaccttcccagcaaccccttacatctttaccagctcagcca
acagcacagtctacaagccagttgcaggttcaagctctaactcagcaacaacaatcccct
acaaaagctgtgccggctttggggaaaagcccgcctcaccactctggattccagcagtat
caacaggcagatgcctccaaacagctgtggaatccccctcaggttcaaggcccattaggg
aaaattatgcctgtgaaacagccctactaccttcagacccaagaccccataaaactgttt
gagccgtcattgcaacctcctgtaatgcagcagcagcctctagaaaaaaaaatgaagcct
tttcccatggagccatataaccataatccctcagaagtcaaggtcccagaattctactgg
gattcttcctacagcatggctgataacagatctgtaatggcacagcaagcaaatatagac
cgcaggggcaaacggtcaccaggagtcttccgtccagagcaggatcctgtacccaggatg
ccatttgaggaccccaagagctcccctctgcttcctccggacctgttaaagagtctggct
gccttggaggaagaggaagagctgattttttctaaccctcctgatctttacccggctctg
ctggggcctctcgcctctcttcctggacgaagcctttttaaatccttattggagaagccc
tcagaactcatgtcacattcatcctctttcctgtccctcaccggattctctctcaatcag
gaaagatacccaaataatagtatgttcaatgaagtatatgggaaaaacttgacatccagc
tccaaagcagaactcagtccctcaatggccccccaggaaacatctctgtattcccttttt
gaagggactccgtggtctccatcacttcctgccagttcagatcattcaacaccagccagc
cagtctcctcattcctctaacccaagcagcctgcccagctctcctccaacacacaaccat
aattctgttccattctccaattttggacccattgggactccagataacagggatagaagg
actgcagatcggtggaaaaccgataagccagccatgggtgggtttggcattgattatctc
tcagcaacgtcatcctctgagagcagttggcatcaggccagcactccgagtggcacctgg
acaggccatggcccctccatggaggattcctctgctgtcctcatggaaagcctaaagtct
atctggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcag
cagaagcagaaacagcaacggggacaaggcaccatgaaccctccacactga
DBGET
integrated database retrieval system
