Symphalangus syndactylus (siamang): 129459270
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Entry
129459270 CDS
T10134
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03030
DNA replication
ssyn03410
Base excision repair
ssyn03420
Nucleotide excision repair
ssyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129459270 (LIG1)
03410 Base excision repair
129459270 (LIG1)
03420 Nucleotide excision repair
129459270 (LIG1)
03430 Mismatch repair
129459270 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssyn03032
]
129459270 (LIG1)
03400 DNA repair and recombination proteins [BR:
ssyn03400
]
129459270 (LIG1)
Enzymes [BR:
ssyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129459270 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
129459270 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
129459270 (LIG1)
DNA replication proteins [BR:
ssyn03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
129459270 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
129459270 (LIG1)
DNA repair and recombination proteins [BR:
ssyn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
129459270 (LIG1)
NER (nucleotide excision repair)
Other NER factors
129459270 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
129459270 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DUF1685
Presenilin
Motif
Other DBs
NCBI-GeneID:
129459270
NCBI-ProteinID:
XP_055091796
LinkDB
All DBs
Position
13:30101228..30157547
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKVKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPRPATSPENNASLSDTSPTDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSEDEDRESKRKKEEEEAETLKESLTEAEVATEKEGEDGDQ
PTTPPKPLKTSEAETPTESVSEPEVATKQELQEEEEQTKPPRRAPKTLSSFFTPWKPAIK
KEVKEEEPGAPGKEGAVEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagtgaagaagcct
gagaaggaggcatccaacagcagcagagagacagagccccctccaaaggcggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccggggaggaaggcg
gcccgggtcctgggcagtgaaggggaggaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccccgccccgtcctgccacatctcctgaa
aacaatgcttccctctctgacacctctcccacggacagttccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgaggacgaggacagagaatccaagaggaagaaggaggaggaagaagcggagaccctg
aaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacggggaccag
cccaccacgcctcccaagcccctaaagacctccgaagcagagaccccgacggaaagcgtt
tcagagcctgaggtggccacgaagcaggaactgcaggaggaggaggagcagaccaagcct
ccccgcagagctcccaagacgctcagcagcttcttcaccccctggaagccagcaatcaaa
aaagaagtgaaggaagaggagccaggggctccaggaaaggagggagctgttgagggaccc
ctggacccatccggttacaatcctgccaagaacaactatcatcccgtggaagatgcctgc
tggaaaccgggccagaaggtcccttacctggccgtggcccggacgtttgagaagatcgag
gaggtgtctgctcggctccggatggtggagacgctgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctccctgtcctctacctcagcctcaaccaccttgggcca
ccccagcagggcctggagcttggcgtgggtgatggtgtccttctcaaggcagtagcccag
gccacaggtcggcagctggagtccgtccgggctgaggcagccgagaaaggcgacgtgggg
ctagtggccgagaacagccgcagcacccagaggcttatgctgccaccacctccgctcact
gcctccggggtcttcagcaagttccgcgacatcgccaggctcaccggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctcagtggacggctgcgccttgggctggcagagcagtcagtgctg
gccgccctctcccaggccgtgagcctcacgcccccgggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggagcaaggc
atgatcctgaagcagacgttctgcgaggttcctgacctggaccgaattatccctgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagcccagggattcctctg
aaaccaatgttggcccatcccacgcgaggtgtcagcgaggtcctgaagcgctttgaagag
gcagctttcacctgcgaatacaaatatgacgggcagagagcacagatccacgccctggaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaacactgggaagtacccggac
atcatcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacacc
gaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgctacctccctggac
accaaggatgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcttgcgag
gggctgatggtaaagaccctggatgttgatgccacctacgagatcgccaagagatcacac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctatgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagccca
cgcccttacgtgcggatagatggcgctgtgactcccgaccactggctggaccccagcgct
gtgtgggaggtgaagtgcgctgacctctccctctcccccatctaccctgctgcacggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcccaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccagcaaggcgaggactcaggctctgaccctgaagatacctactaa
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