Symphalangus syndactylus (siamang): 129461226
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Entry
129461226 CDS
T10134
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129461226 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129461226 (XAB2)
03041 Spliceosome [BR:
ssyn03041
]
129461226 (XAB2)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129461226 (XAB2)
Spliceosome [BR:
ssyn03041
]
Complex B
Other components
Prp19-related factors
129461226 (XAB2)
Complex C
129461226 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_MalT
TPR_21
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
129461226
NCBI-ProteinID:
XP_055096184
LinkDB
All DBs
Position
13:complement(33641770..33651991)
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPTQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgagactttcgcggcccgagcggccggaccttgtcttcgaggaagag
gacctcccgtatgaggaggaaatcatgcggaaccagttctctgtcaaatgctggcttcgc
tacatcgagttcaaacagggcgccccgaagcccaggctcaatcagctatacgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcgcgtcgggca
caggtgaagcatcgctgtgtgaccgaccctgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcacaagatgcctcgtctgtggctagattactgccagttcctc
atggaccaggggcgcgtcacacacacccgccgcaccttcgaccgtgccctccgggcactg
cccatcacgcagcactctcgaatttggcccctgtatctgcgcttcctgcgctcacaccca
ctgcctgagacagctgtgcgaggctatcggcgattcctcaagctgagtcccgagagtgca
gaggagtacattgagtacctcaagtcaagtgaccggctggatgaggccgcccagcgcctg
gccaccgtggtgaacgacgagcgtttcgtgtccaaggccggcaagtctaactaccagctg
tggcacgagctgtgcgacctcatctcccagaatccagacaaggtacagtccctcaatgtg
gatgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgt
tctctcgccgactactacatccgcagcggccacttcgagaaggctcgggacgtgtacgag
gaggccatccggacggtgatgaccgtgcgggacttcacacaggtgtttgacagctacgcc
cagtttgaggagagcatgatcgccgcaaagatggagaccgcctcagagctggggcgcgag
gaggaggatgatgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgccaaaacccacaccacgtgcacgagtgg
cacaagcgtgtcgccctgcaccagggccgcccccgggagatcatcaacacctacacagag
gctgtgcagacagtggaccccttcaaggccacaggcaagccccacactctgtgggtggcg
tttgccaagttttatgaggacaacgggcagctggatgatgcccgtgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggatgacctggcaagcgtgtggtgtcagtgcggg
gagctggagctccgacacgagaactacgatgaggccttgcggctgctgcgaaaggccaca
gcgctgcctgcccgccgggccgagtactttgatggctcagagcccgtgcagaaccgcgtg
tacaagtcactgaaggtctggtccatgctcgctgacctggaggagagcctcggcaccttc
cagtccaccaaggctgtgtatgaccgcatcctggacctgcgcattgccacaccccagatc
gtcatcaactatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcattgcccgctatgggggccgcaagctggagcgggcgcgggacctgttt
gaacaggctctggacggctgccccccaaaatatgccaagaccttgtacctgctatacgca
cagctggaggaggagtggggcctggcccggcacgccatggcagtgtacgagcgtgccacc
agggccgtggagcccacccagcagtacgacatgttcaacatctacatcaagcgggcggcc
gagatctatggggtcacccacacccgcggcatctaccagaaggccattgaggtgctgtcg
gacgagcatgcgcgtgagatgtgcctgcggtttgcagacatggagtgcaagcttggggag
atcgaccgcgcccgggccatctacagcttctgctcccagatctgtgacccccggacgact
ggcgcgttctggcagacgtggaaggacttcgaggtccggcatggcaatgaggacaccatc
aaggagatgctgcgtatccggcgcagcgtgcaggccacatacaacacgcaggtcaacttc
atggcctcgcagatgctcaaggtctcgggcagtgccacgggcaccgtgtctgacctggcc
cctgggcagagcggcatggacgacatgaagctgctggaacagcgggcagagcagctggca
gctgaggcggagcgcgaccagcccttgcgcgcccagagcaagatcctgttcgtgaggagt
gacgcctcccgagaggagctggcagagctggcacagcaggtcaaccctgaggagatccag
ctgggcgaggacgaggatgaggacgagatggacctggagcccaacgaggttcggctggag
cagcagagcgtgccagccgcagtgttcgggagcctgaaggaagactga
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