Symphalangus syndactylus (siamang): 129462444
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Entry
129462444 CDS
T10134
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
129462444 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssyn04121
]
129462444 (SLX4)
03400 DNA repair and recombination proteins [BR:
ssyn03400
]
129462444 (SLX4)
Ubiquitin system [BR:
ssyn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
129462444 (SLX4)
DNA repair and recombination proteins [BR:
ssyn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
129462444 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
Motif
Other DBs
NCBI-GeneID:
129462444
NCBI-ProteinID:
XP_055098391
LinkDB
All DBs
Position
14:115319412..115349878
Genome browser
AA seq
1844 aa
AA seq
DB search
MKLSVNETQLGFYLGSLSHLSARPGIDPRSSEDQPESLKTGQMMDESDEDFKELCASFFQ
RVKKHGIKEVSGERKTQKAASDGTQIRSKLKRTKQTATKTKTLQGPAEKKLPSGSQACKT
KKQGVTKWQASKPALSVNGDGSVLASAPDQPVLWETAQNTQTGNWQEPLPKLSREKTREK
VPNSDSQPPPSCLTTAVPSPSKPRTAQLVLQRMQQFKRADPERLRHASEECSLEAAREEN
VPKDPQEEMMAGNVYGPGPPAPESDAAVALTLQQEFARVGASAHDDSLEEKGLFFCQICQ
KNLSAMNVTRREQHVNRCLDEAERTLRPSVPPIPECPICGKPFLTLKSRTSHLKQCAVKM
EVGPQLLLQAVRLQTAQQEGSSSPPSNFSLWLFSIFSDHSGGLKRRGPTSKKEPRKRRKV
DEAPSEDLLVAVALSRSEMEPCVAVPAFRLESAFSERMRPKAEKKSRKKKPPVSPPLLLV
QDSETTGRQIEDRVALLLSEEVELSSTPPLPASRILKEGWERAGQCPPPERKQSFLWEGS
ALTGAWAMEAFYTARLVPPLVPQRPAQGLMQEPVLPLVPPEHSEPGERRSPALHSTPTAG
CGSRGPSPSASQREHQALQDLVDLAREGLSASPWPGSGGLAGSEGTAGLDVVPGGLPLTG
FVVPSQDKHPDRGGSTSLSLGLLVADFGAMVNNPHLSDIQFQTDSGEVLYAHKFVLYARC
PLLIQYVNNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTADTGLPPGLSSELSSLA
HRFGVSELVHLCEQVPIATDSEGKPWEEKEAENCESRAENFQELLRSMWADEEEEAETLL
KSEDHEEDQENVNEAEMEEIYEFAATQRKLLQEERAAGASEDADWLEGGSPVSGQLLASV
QVQKQWDKVEEMEPLEPGRDEAATTWEKVGQCALPPPQGQHSGAQGAVAPEQEAPEEALG
HSSCPSPSRDSRAERKEGSLPHSDDASDYEQLFSSTQGEISEPSQITSEPEEQSGAVRER
GLEVSHRLAPWQASLPHPCCFLLGPPQGRSPRGSHHPHHTSGSSLSTPPSRGGTSQVGSP
NLLSPAVPSKQKRDRSILTLSKEPGHQKGKERRSVLECRNKGVLMFPEKSLSIDLTQSNP
EHSSSISQKSSSRLNKEDEVILLLDSDEELELEQTKVKSISGDPREERKALEISPRSCEL
FSVIDVDADQEPSQSPPRREAVLQQEDEGALPENRGSLGSRGAPWLFCDRESSPSEASTT
DTSWLVPATPLASRSRDCSSQTQISSLRSGLAVEAVTQHTPRASVGNREGNEAAQKFSVI
RPQTPPPQTPSSCLTPVSPRTSDGRRQGHRSPSRPHPGGHPHSSPLAPHPISGDRAHFSR
RFLKHSPPGPSFLNQTTASEVVEVGDSDDEQEVASHQANSSPPLDSDPPIPTDDCCWHME
PLSPIPIDHWNLERTGPLSTSSPSRRMKEATDSYDRRSPGLLDTTPIRGSCATQRKLQEK
SSGTGSPGNSRPSFLNSALWDVWDGEEQRPPETPPPAQMLSAGGAQKPEGLETPKDANRK
KNLPPKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLDSDSE
DESQSSQPLLQAPCCQTLTSQTYKPSRAGVHAQQEATIGPGAHRPKGPAKTKGPQHQRKH
HESITPPSRSPTKEAPSGLDDDAQIPASQESVATSVDGSDSSLSSQSSSSCEFGAAFESA
GEEEEGEEEVSASQAAVQAADTDEALRCYIRSKPALYQKVLLYQPFELGELQAELKQNGL
CVSSRRLLDFLDTHCITFTTAATRREKLQGRRRQPRGKKKAERN
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgagtgtgaatgagactcagctaggcttctacttgggttcactttctcatctg
tctgcacgtcccgggattgaccctcgctcctctgaagaccagcctgaaagccttaaaact
ggtcagatgatggatgagtctgatgaggactttaaagaactctgcgctagctttttccaa
agggtgaaaaaacatggaatcaaggaagtgtcaggagaaaggaaaacacaaaaggccgcc
tcagacggcactcagataagaagcaaattgaaacggaccaaacaaactgctaccaagacc
aaaacccttcaaggccctgcagagaagaaacttccatctggcagccaggcctgtaagacg
aaaaagcaaggggtaaccaaatggcaagcaagtaaaccggccctctctgtgaatggggat
gggagtgtgcttgcctctgctccagatcagcctgtgctctgggaaacagcacaaaacacc
cagacgggtaactggcaagaaccgttgccaaagctttccagagagaaaaccagagagaaa
gtgcccaacagcgactcccagcctcctccttcctgtttgacaacagcagtgccaagtccc
tccaaaccccgcacagcacaattggtcctacagcgaatgcagcagttcaagagagcagac
cccgagcgtctaagacacgcttcagaagagtgctccctcgaggctgcacgggaagaaaat
gtcccaaaggatcctcaagaggagatgatggcggggaatgtgtatgggcctgggccccct
gccccagagagcgacgctgcggtggccttgaccctgcagcaggagtttgcacgggtagga
gcatcggcacatgatgatagcctggaggaaaagggtttgttcttctgccagatttgtcaa
aagaacctctcagccatgaacgtgacccgaagggaacagcatgtgaacaggtgcttggat
gaagctgaaaggacactaagaccttccgtgcctccgatccctgagtgcccgatttgtggg
aaaccgtttcttaccttaaagagcagaaccagtcacttgaagcaatgtgctgtgaagatg
gaggttggcccccagctcctgctgcaggctgtgcggctgcagacagcacagcaggagggg
agcagcagcccccccagtaacttttctctttggctattttctatcttcagtgatcacagt
ggaggtctgaaacggagaggacccaccagcaagaaggagccacggaagaggcggaaggta
gacgaggcaccgtccgaggacctgctggtggccgtggctctgtcccggtcggagatggag
ccatgtgtggccgtgccagcgttcaggctggaaagtgccttttctgagaggatgagacca
aaagcagagaagaaaagtcgcaagaagaaacccccggtgtcccccccattgttgttagtc
caggactctgaaaccacaggccgacagatagaggaccgtgtggctctgctcctttctgag
gaagtggaattatctagcacgccaccacttcctgccagcaggattttaaaggaagggtgg
gaaagagcgggccagtgtcctccacctgaacgcaagcagagctttctgtgggagggcagc
gcactgactggggcctgggccatggaggccttctacacggccaggctggtccctcctctc
gtgccccagcggcctgcccagggcctcatgcaggagcctgtgctgccactggtgccacct
gagcactcagagccgggcgagcgaaggtcacccgctctccacagcacccccactgcaggc
tgtggctccagggggccgtcgccttcggccagtcagagagagcaccaggccctgcaggac
ctcgtggacctggcgagggagggactgagcgccagcccgtggcctggcagtgggggcctg
gctggctcggaagggactgcagggttggacgtggtgcccggcggccttcctttgactggg
tttgtggtgccgtcgcaggacaagcacccggacaggggcggcagcacctcgctctccctc
gggctgctggttgctgactttggcgccatggtcaataacccacacctgagtgacatccag
ttccagacggacagcggagaggtgctttatgcccacaagttcgtgctttatgcccgatgc
ccactcctcatccagtatgtgaacaatgaaggcttctccgctgtagaggacggggttctg
acccagcgtgtcctgctgggtgacgtgagcacggaggctgcccgcacgttcctgcactat
ctctacaccgcggacactggccttcctcctggccttagctctgagctgagctccctggcc
cacaggtttggcgtgagcgagctcgttcacctgtgcgaacaggtgcctattgccacggac
tcagagggcaaaccgtgggaggagaaggaagcagagaattgcgaaagcagggccgagaat
ttccaggagctcttgaggtcaatgtgggcagatgaagaggaggaagcggagactttgttg
aaatccgaggaccacgaagaagatcaagaaaatgtgaatgaagcagaaatggaagaaatt
tatgaatttgcagctactcagcgaaagctgctccaggaagaaagggcagcgggtgccagc
gaggacgctgactggctggagggtggcagtccggtttctgggcagctcctagcaagtgtc
caggtgcagaaacagtgggacaaggtggaggagatggagccgttggagccgggaagagat
gaggccgccaccacctgggagaaggtgggacagtgtgctctcccgccaccccagggccag
cactcaggggcacagggagcagtggcccctgagcaggaggcgccagaggaggcgcttggc
cattccagctgccccagcccttccagggactcccgggcagagagaaaagaaggctccctt
ccgcactcagatgatgccagtgactacgaacagctcttctcatcaactcagggagagatc
tcagagccgtcccaaataacaagtgagcctgaggaacaaagtggcgctgtcagggaaagg
gggctggaggtttctcatcgcctggctccctggcaggcgtctctaccgcacccgtgctgc
ttcctattggggcctccccagggcaggagtccccgcgggtctcatcaccctcatcacaca
agtgggtcgtccctgtcgacacccccgtcccgcggcggaacttcccaggtgggctctcca
aacttgctgtctccagctgtgccatcaaagcagaaaagggacaggagcatcctcacgctg
tctaaagagccagggcaccagaaaggcaaagagcgtcggtccgtgctggagtgcagaaat
aagggggtcctgatgttcccagaaaaatctctgtccattgacctaacccagtcaaatcct
gagcattcgagctccatatctcagaagtcttcatccagactgaacaaagaagatgaggtc
atcctgttactggactcggatgaggagctggagctagaacaaaccaaagtgaagtccatt
tctggtgatcctcgggaagaaaggaaagctctagaaattagccctaggtcctgtgagctg
ttttccgtcattgatgttgatgcagatcaggaaccttcccagagcccaccaagaagggaa
gctgtgctgcagcaggaggatgagggggcactgccggagaatcggggctctttgggcagc
agaggggctccctggctgttctgtgaccgtgagagcagccccagcgaggccagcaccaca
gacacctcatggctggtgcccgccaccccgctagccagcagaagccgcgactgttcttcc
cagacccaaatcagcagcctcaggagtgggctggcggtggaggcggtgactcagcacacg
cccagggcctcggtaggaaacagggaagggaacgaagccgcacagaagttttctgtcatc
aggccccagacaccaccgccccagacaccgtcctcatgcctcactcctgtctctccaaga
acttctgacggcagaaggcaaggccacagaagcccttcccgtccccaccccgggggccac
ccgcactcctctccactggctccacatcccatctcaggggaccgcgcccactttagcagg
cgattcctgaaacactcgccacctgggccaagcttcctgaaccagaccacagcaagtgaa
gtggtggaagtcggagacagtgacgatgagcaggaggtggcctcccatcaggccaacagc
agccccccactggacagtgaccccccaattccaactgacgactgctgctggcacatggag
cccctctcgccaattcccattgaccactggaacctggagcggaccggccccctgagcacc
agcagccccagccgcaggatgaaggaggccaccgacagctatgaccgtcgctccccagga
ctcctggacaccacccccatccgaggaagctgcgctacccagaggaaattgcaagagaag
tcctcgggcacgggctcccccgggaacagcaggccgagctttctgaattcggctctgtgg
gacgtttgggacggggaagagcagaggcctccagagacccctcctccggcccagatgctc
agcgccggtggagctcagaagcccgaagggttagagacacccaaagatgctaatcggaag
aagaacttgcccccgaaagtgcccataacgccaatgccacagtattccattatggagacg
ccggtgctgaagaaagaactggataggtttggagtccgccctctgcctaaacgccaaatg
gttctgaagctgaaggagatattccagtacactcaccagaccctggactcagactctgag
gacgagagccagtcctcacagccgctattgcaggcgccttgctgccagaccctcacctcc
cagacctacaagccttcaagggcaggggtccatgcccagcaggaagccaccataggaccc
ggggcccataggcccaagggacctgctaagaccaagggcccccaacatcaaaggaagcat
catgaaagcatcacacccccaagcaggtcgcccaccaaggaggcaccttcaggcctcgat
gatgacgcccagatcccagcctctcaagaatccgtggccacctctgtggatggcagtgac
agctccttgagctcacagagttcttcctcctgtgagtttggagcggcatttgagtctgca
ggtgaagaggaggagggcgaggaggaggtcagtgcctcgcaggcagccgtgcaggcggcg
gacacggacgaggcgctgagatgctacatccgctccaagccggccctgtaccagaaggtg
ctgctgtaccagccctttgagctgggggagctgcaggcagagctgaagcagaacggcctc
tgtgtgtcctcgcgcaggctgttggacttcctggacacccactgtatcaccttcaccact
gccgccacccgcagggagaagctccagggcaggaggcggcagcctcgtggcaagaagaag
gcggagcggaactga
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integrated database retrieval system
