Symphalangus syndactylus (siamang): 129462519
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Entry
129462519 CDS
T10134
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04612
Antigen processing and presentation
ssyn05145
Toxoplasmosis
ssyn05152
Tuberculosis
ssyn05164
Influenza A
ssyn05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
129462519 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
129462519 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
129462519 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
129462519 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
129462519 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssyn01001
]
129462519 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssyn04054
]
129462519 (CIITA)
Enzymes [BR:
ssyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129462519 (CIITA)
Protein kinases [BR:
ssyn01001
]
Serine/threonine kinases: Other
TAF1 family
129462519 (CIITA)
Pattern recognition receptors [BR:
ssyn04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129462519 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
LRR_9
Motif
Other DBs
NCBI-GeneID:
129462519
NCBI-ProteinID:
XP_055098527
LinkDB
All DBs
Position
14:complement(108004013..108065375)
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AA seq
1131 aa
AA seq
DB search
MRCLAPHPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEA
EIELYSEPDTDTINCDQFSRLLSDMEGDEETREAYANIAELDQYVFQDSQLEGLSKDIFI
EHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHRKPAEPPTVVTGSFLMEPGNDS
STLPCLPLPALFNEEPDSGQMCLEKTDQMPIPSSSSSLSCLNLPEGPIQFVSTISTLPQG
LWQISGAGTGVSSIFIYHGEVPQASQVPPPSGLTVHGLPTSPDRPGSTSPFAPSATDLPS
MPEPALTSRANMTEHKTSPTQSQAAGEVSNKLPKWPEPVEQFYRSLQDTYRAEPAGPDGI
LVEVDLVRARLERSSSKSLERELATPDWAERQLAQGGLAELLLAAKEHRRPRETRVIAVL
GKAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGYAYRLQDLLFSLGPQPLVA
ADEVFSHILKRPDRVLLILDAFEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKTLLR
GCTLLLTARPRGRLVQSLSKADTLFELCGFSTEQAQAYVMRYFESSGMTEHQDRALTLLR
DRPFLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALNSPPGALAE
LAKLAWELGRRHQSTLQEDQFPSADVKNWAMAKGLVKHPPGAAESELAFPSFLLQCFLGA
LWLALNGDIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPRPRCLGALVGPSAT
ALADRKQKVLARYLRRLQPGTLRARQLLELLHCAHEAEEAGIWQHVVQELPACLSFLGTR
LTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTGFRAALSDTVALWESL
RQHGETKLLQAAEEKFTIEPFKVKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKK
LEFALGPISGPQAFPKLVRILTAFSSLQHLDLDALSENKIGDEGVSQLSATFPQLKSLET
LNLSQNSITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDV
QYNKFTAAGAQQLAASLRRCPHVETLAMWTPTIPFSVQEHLQQQDSRISLR
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgcctggctccacaccctgctgggtcctacctgtcagagccccaaggcagctca
cagtgtgccaccatggagttggggcccctagaaggtggctacctggagcttcttaacagc
gatgctgaccccctgtgcctctaccacttctatgaccagatggacctggctggagaagca
gagattgagctctactcagaacccgacacagacaccatcaactgtgaccagttcagtagg
ctgttgtctgacatggaaggcgatgaagagaccagggaggcttatgccaatatcgcggaa
ctggaccagtatgtgttccaggactcccagctggagggcctgagcaaagacattttcata
gagcacataggaccagatgaagtgatcggtgagagtatggagatgccagcagaagttggg
cagaaaagtcagaaaagacccttcccagaggagcttccagcagacctgaagcaccggaag
ccagctgagccccccactgtggtgactggcagtttcctaatggaaccagggaatgactcc
tccaccctgccctgcctgccactgcctgctctgttcaacgaggagccagactccggccag
atgtgcctggagaaaactgaccagatgcccataccttcctccagttcctcattgagctgc
ctgaatctccctgagggacccatccagtttgtctccaccatctccactctgccccagggg
ctctggcaaatctctggggctggaacaggggtctccagtatattcatctaccacggtgag
gtgccccaggccagccaagtaccccctcccagtggactcactgtccacggcctcccaaca
tctccagaccggccaggctccaccagccccttcgctccatcagccactgacctgcccagc
atgcctgaacctgccctgacctcccgagcaaacatgacagagcacaagacgtcccccacc
caaagccaggcagctggagaggtctccaacaagcttccaaaatggcctgagccggtggag
cagttctaccgctcactgcaggacacgtatcgggccgagcccgcaggccccgatggcatc
ctggtggaggtggatctggtgcgggccaggctggagagaagcagcagcaagagcctggag
cgggaactggccaccccggactgggcagaacggcagctggcccagggaggcctggctgag
ctgctgttggctgccaaagagcaccggcggccgcgtgagacacgagtgattgctgtgctg
ggcaaagctggtcagggcaagagctattgggctggggcagtgagccgggcctgggcttgt
ggccggcttccccagtacgactttgtcttctctgtcccctgccactgcttgaaccgtccg
gggtatgcctatcgcctgcaggatctgctcttctccctgggcccacagccactcgtggca
gccgatgaggttttcagccacatcttgaagagacctgaccgtgttctgctcatcctagac
gccttcgaggagctggaagcgcaagatggcttcctgcacagcacgtgcggaccggcaccg
gcggagccctgctccctccgggggctgctggccggccttttccagaagacgctgctccga
ggttgcaccctcctcctcacagcccggccccggggccgcctggtccagagcctgagcaag
gccgacaccctatttgagctgtgcggcttctccacggagcaggcccaggcctacgtgatg
cgctactttgagagctcaggcatgactgagcaccaagacagagccctgacgctcctccgg
gaccggccatttcttctcagtcacagccacagccccactttgtgccgggcagtgtgccag
ctctcagaggccctgctggagcttggggaggacgccaagctgccctccacgctcacggga
ctctatgtcggcctgctgggccgtgcagccctcaacagccccccgggggccctggcagag
ctggccaagctggcctgggagctgggccgcagacaccaaagtaccctacaggaggaccag
ttcccatccgcagacgtgaagaactgggcgatggccaaaggcttagtgaaacaccccccg
ggggccgctgagtccgagctggccttccccagcttcctcctgcaatgcttcctgggggcc
ctgtggctggctctgaatggcgacatcaaggacaaggagctcccgcagtatctagcattg
accccaaggaagaagaggccctatgacaactggctggagggcgtgccacgctttctggcc
gggctgatcttccagcctcgcccccgctgcctgggagccctagtcgggccatcggcgact
gccttggcggacaggaagcagaaggtgcttgcgaggtacctgaggcggctgcagccgggg
accctgcgggcgcggcagctgctggagctgctgcactgcgcccacgaggcggaggaggct
ggaatttggcagcacgtggtgcaggagctccccgcctgcctctcttttctgggcacccgt
ctcacgcctcctgatgcacatgtactgggcaaggccttggaggcggcgggccaagacttc
tccctggacctccgcagcactggcatttgcccctctggattggggagcctcgtgggactc
agctgtgtcacaggtttcagggctgccttgagcgacacagtggcgctgtgggagtccctg
cggcagcatggggagaccaagctacttcaggcagcagaggagaagttcaccatcgagcct
ttcaaagtcaagtccctgaaggatgtggaagacctgggaaagcttgtgcagactcagagg
acgagaagttcctcggaagacacagctggggagctccctgctgttcgggacctaaagaaa
ctggagtttgcgctgggccccatctcaggcccccaggctttccccaaactggtgcggatc
ctcacggccttttcctccctgcagcatctggacctggatgcactgagtgagaacaagatt
ggggacgagggtgtctcgcagctctcagccaccttcccccagctgaagtccttggaaacc
ctcaacctgtcccagaacagcatcacagacctgggtgcctacaaactcgcagaggccctg
ccttcactcgctgcatccctgctcaggctaagcttgtacaataactgcatctgcgacgtg
ggagccgagagcctggctcgtgtgcttccggatatggtgtccctccgggtgatggacgtc
cagtacaacaagttcacggctgccggggcccagcaactcgctgccagccttcggaggtgt
cctcatgtggagacactggcgatgtggacgcccaccatcccattcagtgtccaggaacac
ctgcaacagcaggattcacggatcagcctgagatga
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