Symphalangus syndactylus (siamang): 129464012
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Entry
129464012 CDS
T10134
Symbol
PABPC3
Name
(RefSeq) polyadenylate-binding protein 3 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
ssyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129464012 (PABPC3)
09123 Folding, sorting and degradation
03018 RNA degradation
129464012 (PABPC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129464012 (PABPC3)
03041 Spliceosome [BR:
ssyn03041
]
129464012 (PABPC3)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129464012 (PABPC3)
mRNA cycle factors
Stress granule specific factors
129464012 (PABPC3)
Spliceosome [BR:
ssyn03041
]
Complex C
Other components
Complex C specific factors
129464012 (PABPC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_3
Nup35_RRM_2
RRM_occluded
YflT
RGP
POP1_C
Motif
Other DBs
NCBI-GeneID:
129464012
NCBI-ProteinID:
XP_055100800
LinkDB
All DBs
Position
15:90419997..90422485
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AA seq
636 aa
AA seq
DB search
MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQ
HPKDAEHALDTMNFDVIKGKPLRIMWSQRDPSLRKSGVGNIFFKNLDKSINNKALYDTVS
AFGNVLSCKVVCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKERE
AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEK
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKN
LDGAIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAYLTNEYMQRKACVPAVPNPVINPYQPAPPSGYFMAAVPQTQNHA
AYYPPSQTAQLRPSPCWTAQGARPHPFQNKPGAIRPAAPRVPFNTMRPASSQVPRVMSPQ
RVANTSTKTVGPRPAAAAAAATPAVHTVPRYKYAAGVRNPQQHLNAQPQVKMQQPAVHGQ
GQETLTAAMLASAPPKEQKQMLGEQLFPLIQAMHPTLAGKITGMLLETDNSELLHMLESP
ESLCSKVDEAVVVLQAYQAKEATQKAVNGATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcacccccagctacccaacggcctcgctctacgtgggggacctccacccc
gacgtgactgaggcgatgctctacgagaagttcagccgggcggggcccatcctctccatc
cgggtttgcagggacgtgatcacccgccgctcctccaactacgcctatgtgaacttccag
cacccgaaggacgcggagcatgctctggacaccatgaattttgatgttataaagggcaag
ccattacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattctttaaaaatctggataaatccattaataataaagcgctgtatgatacagtttct
gcttttggtaacgtcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat
ggatttgtacactttgagacacgtgaagcagctgaaagagctattgaaaaaatgaatgga
attcccctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaacgagaa
gctgaacttggagctagggcaaaagagttccccaatgtttacatcaagaattttggagaa
gacatggacgatgagcgccttaaggatctgtttggcaagtttgggcccaccttaagtgtg
aaagtaatgactgatcaaagtggaaaatccaaaggatttggatttgtaagctttgaaaag
catgaagatgcacagaaggctgtagatgagatgaatggaaaggaactcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggagcggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccaggttgttaatctttatgtgaaaaat
cttgatggtgctattgatgatgaacgtctccggaaagcgttttctccatttggtacaatc
actagtgcaaaggttatgatggaaggtggtcgcagcaaaggatttggtttcgtatgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaacggtagaattgtggccaca
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggcttacctcactaac
gagtatatgcagagaaaggcatgtgtaccagctgtgcccaaccctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctgtcccacagactcagaaccatgct
gcctactatcctcctagccaaactgctcaactaagaccaagtccttgctggactgctcag
ggtgccagacctcatccattccaaaataagcccggtgctatccgcccagctgctcctaga
gtaccatttaatactatgagaccagcttcttcacaggttccacgagtcatgtcaccgcag
cgtgttgctaacacatcaacaaagacagtgggtccacgtcctgcagctgctgctgctgca
gctacccctgctgtgcacacggtcccacggtataaatatgctgcgggagttcgcaatcct
cagcaacatcttaatgcacagccacaagttaaaatgcaacagcctgctgttcatggccaa
ggtcaggaaactttgactgccgccatgttggcatctgcccctcctaaagagcaaaagcaa
atgttgggtgaacagctctttcctcttatacaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagactgataattcagaacttcttcatatgctcgagtctcca
gagtcactctgttctaaggttgatgaagctgtagttgtgctacaagcctaccaagctaaa
gaggctacccagaaagcagttaacggtgccaccggtgttccaactgtttaa
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