Symphalangus syndactylus (siamang): 129465729
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Entry
129465729 CDS
T10134
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ssyn Symphalangus syndactylus (siamang)
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssyn04121
]
129465729 (PDZRN4)
Enzymes [BR:
ssyn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129465729 (PDZRN4)
Ubiquitin system [BR:
ssyn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
129465729 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
Sina_ZnF
zf-rbx1
PDZ_Tricorn
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
129465729
NCBI-ProteinID:
XP_055104181
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All DBs
Position
17:42193545..42583592
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AA seq
1036 aa
AA seq
DB search
MGFALERFAEAVDPALECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLA
PGELYRVLPLRSLIQKLRVQCDYRARGCGHSVRLHELEAHVEHCDFGPARRLRSGRGCAS
GLGGGEVPARGGCSQAPRAGRGGGARGGPLGDRCGRGRGPGPRVLSWRRREKALLAQLWA
LQGEVQLTARRYQEKFTQYMAHVCNFVGDLGGGHRRDGEHKPFTIVLERENDTLGFNIIG
GRPNQNNQEGTSTEGIYVSKILENGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAFR
NAKEPIVVQVLRRTPLSRPAYGMAPEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDIC
PFLLSDSCHSLHPMEHEFYEGNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTVCY
RTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDECKRIV
LLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGTTD
TATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNGTSLKSKRDLGQSQDTLGSVEL
QYNESLVSGEYIDSDCIGNQDEDCERFRQLLELKCKIRNHGEYDLYYSSSTIECNQGEQE
GVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFRNYNTSIDMQRGK
LDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTMAATQ
SSSGQSSKESTSTKAKTTEQGCSAESKEKTLEGSKLPDQEKAVSEHIPYLSPYHSSSYRY
ANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTRY
ITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRR
EFMMRSRLECLKESPQSGGEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKS
PDGTRVHNAFLSVTTV
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgcttcgcagaagccgtggatccggctctggagtgcaaactg
tgcggccaggtgcttgaagagcccctgtgcacgccctgcgggcacgtcttctgcgccagc
tgcctgctgccctgggcggtgcggcggcgccggtgcccgctgcagtgccagcccttggcg
cccggcgagctgtaccgggtgctgccgctgcgcagcctcatccagaagctgcgcgtccag
tgcgactaccgcgcccgcggctgcggccactccgtcaggctgcacgagctggaggcgcac
gtcgagcactgcgacttcggccctgcccgccgcctccgcagcggccggggctgcgcttcg
gggctgggcggtggggaggtgcccgcgcgggggggctgcagtcaggcacccagggctggc
cggggcgggggcgcgcgcggggggccgctgggagaccgctgtggccgcgggcggggaccc
gggcctcgggtcctctcctggaggcggcgcgagaaggcgctgctggcgcagctctgggcg
ctgcagggcgaggtgcagctcacggcgcgcaggtaccaggagaagttcacccaatacatg
gctcacgtctgcaacttcgtcggcgacctgggtggcggccaccgcagggatggagaacat
aagccattcactattgtgttagaaagagaaaatgacactttgggattcaatattatagga
ggtcgaccaaatcagaataatcaggaaggaacatcgactgaaggaatttatgtttcaaaa
attttagaaaatggacctgctgacagagcagatggcctggagattcatgacaaaatcatt
gaggtcaatgggaaggatctttcgaaggccacccatgaagaggcagtggaagcttttcgc
aatgccaaggagcccattgtggtgcaggtgttaaggcgaacacctcttagtagaccagcc
tatgggatggctccagaagtgcagctcatgaatgccagcactcagacggacatcaccttc
gaacacatcatggctctggccaagcttcggccacctacccctccagtgccagacatctgt
ccattcctgctctcagacagctgccattctctgcatccaatggagcatgaattttatgag
ggcaacgagtatatttccagcttgcctgctgatgcagacagaacagaagactttgaatat
gaggaggtcgagttgtgtcgtgttagcagtcaagagaagctgggcctgacagtctgttac
cgaacagatgatgaagaagacaccggcatttatgtcagcgaggttgacccaaatagcatt
gcagccaaagacggccggattcgagaaggggatcggattttgcagataaatggggaagat
gtccagaatcgagaagaagcagtggccttgctgtctaacgatgagtgtaagagaatcgtg
ctgcttgttgcaaggccggagattcagctggatgaaggctggctggaagatgaaaggaat
gaattcttagaggagttaaacttggagatgttggaagaagagcataatgaagcaatgcag
cccactgccaatgaggtggagcagccaaaaaagcaagaagaagaagaaggcacaacagat
actgcaacatcctcatccaacaaccatgagaaggacagtggagtaggacgtacagatgaa
agcttgcgaaatgatgagagctcagagcaggagaatgcagccgaggaccccaatggcaca
tctttgaagagcaagagagacctggggcagagccaagacactctaggaagtgttgaactt
cagtacaatgagagcctcgtgtctggtgaatacattgactcagactgcattggcaaccaa
gatgaggactgtgaaagattcaggcagctcttggagctcaaatgcaagattcgaaatcat
ggagagtatgacctgtattactcaagcagcacaattgaatgcaatcaaggggagcaagag
ggagtggagcatgagctacagttgcttaatgaagagctgagaaacattgagcttgagtgt
cagaatatcatgcaggctcacaggctccagaaagtgacagaccagtatggagacatctgg
acattgcatgatggaggattccggaattataacaccagcatagatatgcaaaggggaaag
ctcgatgacatcatggagcatccagaaaagtctgacaaggacagttctagtgcttacaac
acagctgagagctgcagaagtactccgctcactgtagaccgttcccctgacagttccctt
ccaaggatgatcaacctcaccaataagaaaaacctgagaagcacaatggcagccacccag
tcctcttccggtcagagcagtaaagagtcgacctccaccaaagccaaaaccactgagcaa
ggttgtagcgctgaaagcaaggagaagactttagaaggcagcaagcttcctgatcaagag
aaggcagtcagtgaacacatcccttacctctctccttaccacagctcctcatatagatat
gcaaacatcccagcacacgcccggcattatcaaagctacatgcagttaattcaacagaaa
tctgccgtcgagtatgctcagagtcagctcagcttggtgagcatgtgcaaggagtctcag
aagtgttcagagcccaagatggaatggaaggtgaaaattaggagcgacgggacacggtac
atcacaaagagacccgtgcgagaccgcatcctgaaggaacgtgccttaaagatcaaggaa
gagcggagtggcatgaccacagacgatgacaccatgagcgagatgaaaatggggcgctac
tggagcaaagaggagagaaagcagcacctggttagggccaaagagcagcgccgtcgccgt
gagttcatgatgcgaagcaggttagagtgtctcaaggagagccctcagagcggcggtgag
ggcaagaaggagatcaatatcattgaactgagtcacaaaaagatgatgaaaaagagaaac
aagaaaattttggacaactggatgacaatccaagaattgatgacccatggggccaagtct
ccagatggcacgagagtccataatgccttcttgtcggtgaccactgtatga
DBGET
integrated database retrieval system
