Symphalangus syndactylus (siamang): 129466223
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Entry
129466223 CDS
T10134
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
ssyn04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129466223 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
129466223 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyn03021
]
129466223 (SYMPK)
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129466223 (SYMPK)
Transcription machinery [BR:
ssyn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129466223 (SYMPK)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129466223 (SYMPK)
U7-dependent histone pre-mRNA processing factors
129466223 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
129466223
NCBI-ProteinID:
XP_055105427
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All DBs
Position
17:16198826..16245281
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AA seq
1335 aa
AA seq
DB search
MGGVGLCSGLHFPAALGVSRVRTVPGDEGRWRRQQRRSLGRGTAEGARGERRPEPRDKLT
AAMASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQV
QELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLL
RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDG
IRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQ
LLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVR
KNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLK
KMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLIS
MVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKE
EKVVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAG
GRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNS
GLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPD
QKDGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLL
DLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEV
AAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS
PELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGL
EKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCD
MKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMN
ILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAH
VRSFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLEEDDLEPLALAPAPAPRPPQDL
IGLRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSPSPSARPGPPPSEEAMDFREEGPECE
TPGIFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLTLKEERSPQTLAPIGEDAVKTPS
PVAEDAREPEAKGNS
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggtcgggctgtgctctggactccatttcccggcggccctgggtgtttcgcgc
gtgcgcaccgttcccggcgacgaaggaagatggcggcggcagcagcggcggagtctagga
agaggcactgctgagggggcgcgaggggaacggaggccagagccgcgggacaagctgaca
gcagccatggcgagcggcagtggggacagcgtcacccgccggagcgtggcatcacagttt
ttcactcaagaggagggaccgggcatcgatggcatgaccacctcagagagggtggtggat
cttctgaaccaggcggcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtc
caggagctgataatcaacaaagaccccacactactggacaacttcctggacgagatcatc
gcattccaagcagacaagtcaattgaagtgcgaaaatttgtcatcggcttcatcgaggag
gcatgcaagcgagacattgagttgctgctgaaactcattgcaaacctcaacatgctcttg
agggatgagaatgtgaacgtagtgaagaaggccatcctcaccatgacgcagctctacaag
gtggccctgcagtggatggtgaagtcacgggtcattagcgagctacaggaggcctgctgg
gacatggtatctgccatggcgggggacatcatcctgctgttggactctgacaatgatggc
atccgcacccacgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatg
gctgactcagagataccccgacgccaggagcatgatatcagcctggaccgcatccctcgt
gaccacccctacatccagtacaacgtgctatgggaagagggcaaggcagccttggagcag
ctgcttaagttcatggtgcaccctgccatctcctccatcaacctgaccacagcgctgggc
tccctcgccaatatcgcccgccagagacccatgttcatgtctgaggtgatccaggcctat
gaaactctgcatgccaacctgcccccgacgctggccaaatcgcaggtgagcagcgtgcgt
aagaatctgaagctgcacctgttgagtgtgctgaagcacccggcttccttggagttccag
gcccagatcaccaccctgctggtggacctgggcacacctcaggccgagatcgcccgcaac
atgccgagcagcaaggacacccgcaagcggccccgcgatgactcggactctacactcaag
aagatgaagctggagcccaacctaggggaggatgatgaggacaaggacttggagccaggc
ccatcggggacctcgaaggcctcagcgcagatctccggccagtcagacacggacatcacg
gctgagtttctgcagcctctgctgacgcctgataatgtggctaatctggtcctcatcagc
atggtgtacctgcctgaggccatgccagcctccttccaggccatctacacccctgtggag
tcagcaggcacggaagcccagatcaagcacctggctcggctcatggccacacagatgaca
gctgccggactgggaccaggtgtagagcagaccaaacagtgcaaggaggagcccaaggag
gagaaggtggtgaagacggagagcgtcctgatcaagcggcgcctgtcagcccagggccaa
gccatctcggtggtgggttccctgagctccatgtcccctctggaggaagaggcaccgcag
gccaagaggaggccagagcccattatccctgtcactcagccccggctggcaggcgccggt
gggcgcaagaaaattttccgtctcagcgacgtgctgaagccccttaccgatgcccaggtg
gaagccatgaagctgggcgctgtgaagcggatcctgcgggctgagaaggctgtggcctgc
agcggggcagcccaggtccgcataaagatcctggccagcctggtgacacagttcaactca
ggcctgaaggcggaggtcttgtccttcatcctggaggatgtgcgggcccgcctggatctg
gccttcgcctggctctaccaggagtacaacgcctacctggctgcgggtgcctcgggctcc
ctggacaagtatgaggactgcctcatccgcctgctctctggcctgcaggagaaaccagac
cagaaggatgggatcttcaccaaggttgtgctggaggcgccactcatcacagagagtgcc
ctggaggtggtccgcaagtactgcgaggatgagagtcgcacctatctgggcatgtccacg
cttcgagacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgtcctcctc
gacctcagctcccatgagaaggacaaggtgcgctcccaggccctgctgttcatcaaacgc
atgtatgagaaggagcagctgcgggagtatgtggagaaatttgccctcaactacctgcag
ctcctggtgcaccccaacccaccgtctgtgctgtttggagctgacaaggacacagaggtg
gcagcaccctggacggaggagacagtgaagcagtgtctctacctctacctggccctcctg
cctcagaaccacaagctgatccatgagctggcggccgtgtacactgaagccatcgccgac
atcaagcggacggtgctgagggtcattgagcagccgatccgaggaatgggcatgaactcc
ccggagctgctcctgctggtggaaaattgtcccaagggggcagagacactggtcacgcga
tgtctgcatagcctcacagacaaagtgccaccctccccggagctggtgaagcgggtccgg
gatctctaccacaagcgactgccagacgtccgcttcctcatcccggtgctcaatgggctg
gagaagaaagaggtgatccaggccctgcctaaactcatcaaactcaaccccatcgtggtg
aaggaagtcttcaaccgcctgctgggcacccagcatggtgagggaaactcggccttgtcc
ccgctgaaccctggagagctcctgatcgcattacacaacatcgactccgtgaagtgcgac
atgaaatccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtca
gaggtgctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctc
atgaggaccgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaac
atcctgtcccgcctcatcatgaagcaggtgtggaagtaccccaaggtgtgggagggcttc
atcaagtgctgccagcgcaccaagccccagagcttccaggtcatcctgcagctgccgccc
cagcagctgggagccgtctttgacaagtgcccggagctccgggagcccctgctggcccat
gtccgctccttcaccccccaccagcaagctcacatccctaactccatcatgaccatcttg
gaggccagcggcaagcaggagccagaggccaaggaggcgcctgcggggcccctggaggag
gatgacctggaacccctggccttggccccggccccagcaccccggccccctcaggacctc
atcggcctgaggctggcccaggagaaggctttaaagcggcagctggaggaggagcagaag
ctgaagccgggaggagtgggagccccctcttcttcctcctctccctctccctcggcccgg
ccgggccctcccccgtctgaggaagccatggatttccgggaggaggggcctgagtgcgag
accccgggcattttcatcagcatggatgacgactcggggctgacggaggccgcgctgttg
gactctagtctcgaaggtcccctacccaaggagacggcagcgggtgggctgaccttgaag
gaagagcggagcccccagaccctcgcacctattggagaagatgctgtgaagacccccagc
ccggttgctgaggacgccagggaacccgaggccaaggggaacagctga
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