Symphalangus syndactylus (siamang): 129467418
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Entry
129467418 CDS
T10134
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03082
ATP-dependent chromatin remodeling
ssyn03250
Viral life cycle - HIV-1
ssyn04714
Thermogenesis
ssyn05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129467418 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129467418 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
129467418 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
129467418 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssyn01009
]
129467418 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyn03021
]
129467418 (SMARCB1)
03036 Chromosome and associated proteins [BR:
ssyn03036
]
129467418 (SMARCB1)
Protein phosphatases and associated proteins [BR:
ssyn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129467418 (SMARCB1)
Transcription machinery [BR:
ssyn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129467418 (SMARCB1)
SWI/SNF complex
129467418 (SMARCB1)
Chromosome and associated proteins [BR:
ssyn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129467418 (SMARCB1)
PBAF complex
129467418 (SMARCB1)
SWI/SNF complex
129467418 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
129467418
NCBI-ProteinID:
XP_055107940
LinkDB
All DBs
Position
18:complement(63182456..63228037)
Genome browser
AA seq
403 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLWCGCITMLTLRADS
ALVLHFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEIL
CDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWD
MSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRN
TGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtgaagttccagctggag
gacgacggcgagttctacatgatcggctccgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacacgactctagccaccagtgtgaccctgttaaaagcctcggaagtggaagagattctg
gacggcaatgatgagaagtacaaggctgtgtccatcagcacagagccccccacctacctc
agagaacagaaggccaagaggaacagccagtgggtacccaccctgcccaacagttcccac
cacctggatgccgtgccgtgctccacaaccatcaacaggaaccgcatgggccgggacaag
aagagaaccttccccctttggtgcggctgcatcaccatgctcaccctccgtgctgattcc
gccttagttctccactttgatgaccatgacccagctgtgatccatgagaatgcatctcag
cccgaggtgctggtccccatccggctggatatggagatcgatgggcagaagctgcgagac
gccttcacctggaacatgaatgagaagttgatgacgcctgagatgttttcagaaatcctc
tgtgacgatctagatttgaacccgctgacgtttgtgccagccatcgcctccgccatcaga
cagcagatcgagtcctaccccacggacagcatcctggaggaccagtcagaccagcgcgtc
atcatcaagctgaacatccatgtgggaaacatttccctggtggaccagtttgagtgggac
atgtcggagaaggagaactcgccggagaagtttgccctgaagctgtgctcggagctgggg
ttgggcggggagtttgtcaccaccatcgcatacagcatccggggacagctgagctggcat
cagaagacctacgccttcagcgagaaccctctgcccacagtggagattgccatccggaac
acaggcgatgcggaccagtggtgcccgctgctggagactctgacagatgccgagatggag
aagaagatccgtgaccaggacaggaacacgaggcgtatgaggcgtctcgccaacacggcc
ccggcctggtaa
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