Symphalangus syndactylus (siamang): 129468379
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Entry
129468379 CDS
T10134
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129468379 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssyn03021
]
129468379 (CPSF3)
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129468379 (CPSF3)
Transcription machinery [BR:
ssyn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129468379 (CPSF3)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129468379 (CPSF3)
U7-dependent histone pre-mRNA processing factors
129468379 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
129468379
NCBI-ProteinID:
XP_055109828
LinkDB
All DBs
Position
18:complement(102853400..102905237)
Genome browser
AA seq
688 aa
AA seq
DB search
MRMKIEKVAKEQTLEISTFKGGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYI
DLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI
SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLY
TGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRG
LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ
ININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG
YCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVIL
VHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPE
QGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGD
VEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKG
AVQKVSKKLEMHVYSKRLEIMLQDIFGEDCISVKDDSILSVTVDGKTANLNLETRTVECE
EGSEDDESLREMVELAAQRLYEALTPVH
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgaagattgagaaggtggccaaggagcaaaccctcgaaatatcaacatttaaa
ggtggagctgggcaagaagtaggaagatcatgtattattctcgagttcaaaggaagaaaa
ataatgctcgactgtgggatccaccctggcctagaaggaatggatgctcttccttatatt
gatttaattgacccagctgagattgatctcctattaattagtcatttccatttggatcac
tgtggagccctgccctggtttctacagaagacaagtttcaaaggaagaacatttatgact
catgccacaaaagctatttatagatggcttctttccgattatgtcaaagttagtaacata
tcagcggatgacatgctgtatactgagacagatttggaagaaagcatggacaaaattgaa
actatcaactttcacgaagttaaggaagttgctggaatcaagttttggtgttaccatgca
ggccacgtcctaggagccgccatgttcatgattgagatcgcaggcgtgaagcttttgtac
actggtgatttctcaagacaagaagataggcacttaatggcagctgaaattcctaatatt
aagcctgatattcttatcattgaatctacttatgggacccatatccatgagaaacgtgaa
gagcgagaagcaagattctgtaacactgtccacgatattgtaaacagaggaggcaggggt
ctcattcccgtctttgctcttggaagggctcaggagctgctcttgattctggatgagtac
tggcagaatcacccagaactacatgacattccaatatactatgcatcatctttggccaag
aagtgtatggcagtgtaccagacatatgtaaatgccatgaatgacaaaatccgcaaacag
atcaacatcaataatccctttgttttcaaacacattagtaacctcaagagcatggatcat
tttgatgacattggtcccagtgttgtaatggcctccccaggcatgatgcaaagtggctta
tccagagagttatttgaaagctggtgtaccgataagaggaacggtgtcattatagcagga
tactgtgtagaagggacacttgccaagcacatcatgtctgaacctgaagaaatcactact
atgtctggacagaagttaccactgaaaatgtctgttgattacatttctttctcagctcac
acggattaccagcaaaccagtgaatttattcgtgctttgaaaccgcctcatgtgatttta
gtccatggagaacagaacgaaatggccagattgaaagcagcactgattcgagaatatgaa
gataatgatgaagttcacatagaggttcataatcctcggaatacagaagcagtgacctta
aacttcagaggagaaaaactagccaaggttatgggatttttagcagacaaaaaaccagaa
caaggccagcgggtctcaggaatacttgttaaaagaaactttaattatcacatactttct
ccttgcgacctgtccaattatactgacttggccatgagcactgtgaagcagacccaagcc
attccatatactggtccctttaatttgctctattaccagctgcagaaattgacaggtgat
gtggaagaattagaaattcaagaaaaacctgctctgaaagtgttcaaaaatattactgta
atacaagaaccaggcatggtggtattagaatggctggcaaacccttctaatgatatgtat
gcagatacagtaacaactgtgatattggaagttcagtcaaatcccaaaataagaaaaggt
gcagtacagaaggtttctaaaaaattagaaatgcacgtttacagcaagaggttggagatc
atgcttcaggacatatttggagaagactgtataagtgtaaaggatgactctattcttagc
gtcacagtggacgggaaaactgccaaccttaacttggagacacggactgtagaatgtgaa
gagggaagtgaagacgatgaatcccttcgagaaatggtggagctggctgcacagagactg
tacgaggccctgacgccagttcactga
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