Symphalangus syndactylus (siamang): 129469177
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Entry
129469177 CDS
T10134
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
KO
K12857
Prp8 binding protein
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129469177 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssyn03041
]
129469177 (SNRNP40)
Spliceosome [BR:
ssyn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129469177 (SNRNP40)
Complex C
U5 SnRNP specific factors
129469177 (SNRNP40)
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Cytochrom_D1
WDR54
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
129469177
NCBI-ProteinID:
XP_055111462
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Position
19:146116585..146154206
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AA seq
464 aa
AA seq
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MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIM
LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD
GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD
IRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG
LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI
AAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPISWSNGAISAHCNLCLLSSS
NSPASASQVAGITGTHHHAQLIFFYLFYYFFFFVFLVEIGFHHVGQAGHELLTSSNPPVS
ASQSAGITGVSHCAQLQTVFMWVSMTVSPLLISGETKSSAPFSS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagcagaagcgtaagggcccagagttgccgctggttccagtcaagcggcag
cggcatgagttgctgttgggagcggggtcgggccccggagccgggcagcagcaggcgacg
ccgggagctttgctgcaagcgggacctccaaggtgttcctcccttcaagccccaatcatg
ctgctctctggacatgaaggggaagtatactgctgcaagttccaccccaacggatccacc
ttagcatctgcaggatttgaccgactgatattactgtggaatgtctatggtgactgtgat
aactatgccacactgaagggacacagtggagcagtgatggaactgcattacaacacagat
ggcagtatgctcttctcagcatccacagataaaactgtggctgtgtgggatagcgaaaca
ggtgagagggttaaaaggctaaagggacatacttcgtttgtgaattcctgttatccagcc
aggagaggccctcagcttgtttgcactggcagtgacgatggcacagttaagctttgggac
atccggaagaaagcagccatccagacatttcagaacacgtaccaggtgttagctgtgacc
ttcaatgacacaagtgatcagattatttctggtggaatagacaatgatatcaaggtctgg
gacctgcgccagaacaagctaacctacaccatgagaggccatgcagattcagtgactggc
ctgagtttaagttctgaaggctcttatcttttgtccaatgcaatggacaatacagttcgt
gtctgggatgtccggccattcgcccccaaagagaggtgtgtaaagatatttcaaggaaat
gtgcacaactttgaaaagaacctcctgagatgttcttggtcacctgatggaagcaaaata
gcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggagaatattg
tataagctgcccggccatgctggctccatcaatgaagttgctttccaccctgacgagccc
atcagttggagcaatggtgcaatctcggctcactgcaacctctgcctcctgagttcaagc
aattctcctgcctcagcctcccaagtagctgggattacaggcacccaccaccatgcccag
ctaatttttttttatttattttattatttttttttttttgtatttttagtagagataggg
tttcaccacgttggtcaggctggtcatgaactcctgacctccagtaatccacccgtctca
gcctcccaaagtgctgggattacaggtgtgagccactgtgcccagctgcaaacagtcttt
atgtgggtatcaatgacagtctcaccattgctcataagtggtgagactaagagcagtgct
ccattttcttcttga
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