KEGG   Symphalangus syndactylus (siamang): 129475582
Entry
129475582         CDS       T10134                                 
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
ssyn  Symphalangus syndactylus (siamang)
Pathway
ssyn04151  PI3K-Akt signaling pathway
ssyn04382  Cornified envelope formation
ssyn04510  Focal adhesion
ssyn04512  ECM-receptor interaction
ssyn04518  Integrin signaling
ssyn04820  Cytoskeleton in muscle cells
ssyn04926  Relaxin signaling pathway
ssyn04933  AGE-RAGE signaling pathway in diabetic complications
ssyn04974  Protein digestion and absorption
ssyn05146  Amoebiasis
ssyn05165  Human papillomavirus infection
ssyn05200  Pathways in cancer
ssyn05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:ssyn00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    129475582 (COL4A6)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129475582 (COL4A6)
   04518 Integrin signaling
    129475582 (COL4A6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129475582 (COL4A6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129475582 (COL4A6)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    129475582 (COL4A6)
  09154 Digestive system
   04974 Protein digestion and absorption
    129475582 (COL4A6)
  09158 Development and regeneration
   04382 Cornified envelope formation
    129475582 (COL4A6)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    129475582 (COL4A6)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    129475582 (COL4A6)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    129475582 (COL4A6)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    129475582 (COL4A6)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    129475582 (COL4A6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssyn04147]
    129475582 (COL4A6)
   00536 Glycosaminoglycan binding proteins [BR:ssyn00536]
    129475582 (COL4A6)
Exosome [BR:ssyn04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   129475582 (COL4A6)
Glycosaminoglycan binding proteins [BR:ssyn00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129475582 (COL4A6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 129475582
NCBI-ProteinID: XP_055123701
LinkDB
Position
X:complement(112074785..112353926)
AA seq 1705 aa
MHPGLWLLLVTLCLTEELAGAGEKSYGKPCGGQDCSGSCQCFPEKGARGRPGPIGIQGPT
GPQGFTGSTGLSGLKGERGSPGLLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPP
GLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLDG
ITGPQGVPGSPGAVGPAGPPGLQGPPGPPGPPGPDGNMGLGFQGEKGVKGDVGLPGPAGP
PPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGP
MGSEGIHGPPGQQGKKGTLGFPGLNGFQGIEGQKGDIGLPGPDVFIDIDGAVISGNPGDP
GVPGLPGLKGDEGIQGLRGPSGIPGLPALSGVPGALGPQGFPGLKGDQGNPGRTIIGAAG
LPGRDGLPGPPGPPGPPSPEFETETLHNKEPGFPGLRGEQGPKGNPGLKGIKGDSGFCAC
DGGFPNTGPPGEPGPPGPRGLIGLPGLKGAGGDRGSGGAQGPAGAPGLVGPLGPSGPKGK
KGEPILSTIQGIPGDRGDSGSQGFRGVTGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLP
GLPGEKGHPGPPGLPGIGLPGLPGPRGLPGDKGKDGLPGQQGLSGSKGDCCCREKVGKGD
LDTERGITLPCIIPGSYGPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGNKGEPGSPGLVH
LPELPGFPGPRGEKGLPGFPGLPGKDGLPGMIGSPGLPGSKGATGDIFGAENGAPGEQGL
QGLTGDKGFLGDSGLPGLKGVHGKPGLLGPKGERGSPGTPGQVGQPGTPGSSGPYGIKGK
SGLPGAPGFPGISGHPGKKGTRGKKGPPGSIVKKGLPGLKGLPGNPGLVGLKGSPGSPGV
AGLPAPSGPKGEKGSVGFVGFPGIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGD
RGNPGPVGIPSPRSPLSNLWLRGDKGSQGSAGSNGFPGPRGDKGEAGRPGPPGLPGVPGL
PGITKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPG
LKGDNGQTVEISGSPGPKGQPGESGFKGTKGKDGLIGNIGFPGNKGEDGKVGVSGDVGLP
GAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGSPGLIGPKGFPGFPGLHGLNGLPGTKGTH
GTPGPSITGVPGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAP
GISLPSLIAGQPGDPGRPGLDGERGRPGPPGPPGPPGPSSNQGDTGDPGFPGIPGPKGPK
GDQGIPGFSGLPGELGLKGVRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGPQGAP
GQTPTAEAVQVPPGPLGLPGIDGIPGLIGDPGAQGPVGLQGSKGLPGIPGKDGPSGLPGP
PGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSVRVGYTLVKHSQSEQVPLCPIGM
SQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLS
TTAPIPMMPVSQTQIPRYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGEL
PVSETLKAGQLHTRVSRCQVCMKSL
NT seq 5118 nt   +upstreamnt  +downstreamnt
atgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggcagga
gcgggagagaagtcttatggaaagccatgtgggggccaagactgcagtgggagctgtcag
tgttttcctgagaaaggagcgagagggcgacctggaccaattggaattcaaggcccaaca
ggtcctcaaggattcactgggtctactggtttatcgggattgaaaggagaaaggggttcc
ccaggccttctgggaccttatggaccaaaaggagataagggtcccatgggagttcctggc
tttcttggcatcaatgggattccgggccaccctggacagccaggccccagaggcccacct
ggtctggatggctgtaatggaactcaaggagctgttggatttccaggccctgatggctat
cctgggcttcttggaccacccgggcttcctggtcagaaaggatcaaaaggtgaccctgtc
cttgctccaggtagtttcaaaggaatgaagggggatcctgggctgcctggactggatgga
atcactggcccacaaggagtacccggatctcctggagctgtaggacctgcaggaccacca
ggattacaaggtcctccagggcctcctggccctcctggtcctgatgggaacatggggcta
ggttttcaaggagagaaaggagtcaagggggatgttggcctccctggcccagcaggacct
ccaccatctactggagagctggaattcatgggattccccaaagggaagaaaggatccaag
ggtgaaccagggcctaagggttttccaggcataagtggccctccaggcttcccgggcctt
ggaactactggagaaaagggagaaaagggaatccctggtttgccaggacctaggggtccc
atgggttcagaaggaatccacggccctccagggcaacagggcaagaaagggaccctggga
tttcctgggcttaatggattccaaggaattgagggtcaaaagggtgacattggcctgcca
ggcccagatgttttcatcgatatagatggtgctgtgatctcaggtaatcctggagatcct
ggtgtacctggcctcccaggccttaaaggagatgaaggcatccaaggcctacgtggccct
tctggtatccctggcttgccagcattatcaggtgtcccaggagccctagggcctcaggga
tttccagggctgaagggggaccaaggaaacccaggccgtaccataattggagcagctggc
ctgcctggcagagatggtttgccaggcccaccaggtccaccaggcccacctagtccagaa
tttgagactgaaactctacacaacaaagagccagggttccctggtctccgaggagaacaa
ggtccaaaaggaaacccaggcctcaaaggaataaaaggagactcaggtttctgtgcttgt
gacggtggttttcccaacactggaccacccggggaaccaggcccacctggtccacggggt
ctcataggccttccaggccttaaaggagccggaggagatcgaggctctgggggtgcacag
ggcccagcaggggctccaggcttagttgggcctctgggtccttcaggacccaaaggaaag
aagggggaaccaattctcagtacaatccaaggaattccaggggatcggggtgattctggc
tcccagggcttccgtggtgtaacaggagaaccaggcaaggatggagtaccaggtttacca
ggtctgccaggccttccgggtgatggtggacagggcttcccaggtgaaaaggggttacct
ggacttcctggtgaaaaaggccatcctggtccacctggcctcccaggaattgggttacca
ggacttcctggaccccgtgggcttcctggagataaaggcaaggatggattacccggacaa
caaggcctttctggatctaagggtgactgctgctgtagagagaaggttggtaaaggagac
ttagacacagagagaggaatcaccctgccctgtattattcctgggtcatacggtccatca
ggatttccaggcactcccggattcccaggccctaaagggtcccgcggcctccctgggacc
ccaggccagcctggatcaagtggaaataaaggagagccagggagtccaggattggttcat
cttcctgaattaccaggatttcctggacctcgtggggagaagggattgcctgggtttcct
gggctccctggaaaagatggcttgcctgggatgattggcagtccaggcttacctggttcc
aagggagccactggtgacatctttggtgctgaaaatggtgctccgggggagcaaggccta
caaggattaacaggggacaaaggatttcttggagactctggccttccaggactcaagggt
gtgcatgggaagcctggcttactaggccccaaaggtgagcggggcagccctgggacacca
ggacaggtgggacagccaggcaccccaggatctagtggtccatatggcatcaagggcaaa
tctgggctcccaggagcaccaggcttcccagggatctcaggacatcctggaaagaaagga
acaagaggcaagaaaggtcctcctggatcaattgtaaagaaagggctgccagggctaaaa
ggccttcctggaaatccaggcctagtaggactgaaaggaagcccaggctctccaggggtc
gctgggttgccagccccctctggacccaagggagagaaggggtctgttggattcgtaggt
tttccaggaataccaggtctgcctggtattcctggaacaagaggattaaagggaattcca
ggatcaactggaaaaatgggaccatctggacgcgctggtactcctggtgaaaagggagac
agaggcaatccggggccagtcggaatacctagtccaagaagtccattgtcaaacctttgg
ctcagaggagacaaaggctctcaaggctcagccggatccaatggatttcctggtccaaga
ggtgacaaaggagaggctggtcgaccggggccaccaggcctgcctggagttcctggcctc
ccaggcattaccaaaggagttagtggaaagccagggccccctggcttcatgggaatccgg
ggcttacctggcctgaaggggtcctctgggatcacaggtttcccaggaatgccaggagaa
agtggttcacaaggtatcagagggtcgcctggactcccaggagcatctggtctcccaggc
ctgaaaggagacaacggccagacagttgaaatttccggtagcccaggacccaagggacag
cctggtgaatctggttttaaaggtacaaaaggaaaagatggactaataggcaatataggc
ttccctggaaacaaaggtgaagatggaaaagttggtgtttctggagatgttggccttcct
ggagctccaggatttccaggagttgccggcatgagaggagaaccaggacttccaggttct
tctggtcatcaaggggcaattgggcccctaggatcccccggattaataggacccaaaggc
ttccctggatttcctggtttacatggactgaatgggcttccgggcaccaagggtacccat
ggcactccaggacctagtatcaccggtgtgcccgggcctgctggtctccctggacccaaa
ggagaaaaaggatatccaggaattggcatcggagctccagggaagccgggcctgagaggg
caaaaaggtgatcgaggtttcccaggtctccagggccctgctggtctccctggtgcccca
ggcatctccttgccctcactcatagcaggacagcctggtgaccccgggcgaccaggccta
gatggagaacgaggccgcccaggcccccctggacccccaggtccccctgggccatcctcg
aatcaaggtgacaccggagaccctggcttccctggaattcctggacctaaagggcctaag
ggagaccaaggaattccaggtttttctggcctccctggagagctaggactgaaaggcgtg
agaggtgagcctggcttcatggggactccaggcaaggttgggccacctggagacccagga
tttcccggaatgaaggggaaggcggggccaagaggctcttctggcccccaaggtgctcct
ggacaaacaccaactgcagaagctgtccaggttcctcctggacccttgggtctaccaggg
atcgatggcatccctggcctcattggggaccctggggctcaaggccctgtaggcctacaa
ggctctaaaggtttacctggcatccccggcaaagatggccccagtgggctcccaggccca
cctggggctcttggtgatcctggtctgcctggactgcaaggccctccaggatttgaagga
gctccagggcagcaaggccccttcgggatgcctggaatgcctggccagagcgtgagagtg
ggctacacgttggtaaagcacagccagtcggaacaggtgcccctgtgtcccatcgggatg
agccagctgtgggtgggatacagcttactgtttgtggaggggcaagagaaagcccacaac
caagacctgggctttgctggctcctgtctgccccgcttcagcaccatgcccttcatctac
tgcaacatcaacgaggtgtgccactatgccaggcgcaatgataaatcttactggctctcc
actactgcccctatccccatgatgcctgtcagccagacccagattccccggtacatcagc
cgctgctctgtgtgtgaggcaccctcacaagccattgctgtgcacagccaggacatcacc
atcccgcagtgccccctgggctggcgcagcctctggattgggtactctttcctcatgcac
actgccgctggtgccgagggtggaggccagtccctggtctcacctggctcctgcctagag
gactttcgggccactcctttcattgagtgcagtggtgcccgaggcacctgccactacttt
gcaaacaagtacagtttctggttgaccacagtggaggagaggcagcagtttggggagttg
cctgtgtctgaaacgctgaaagctgggcagctccacactcgagtcagtcgctgccaggtg
tgtatgaaaagcctgtag

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