Symphalangus syndactylus (siamang): 129476138
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Entry
129476138 CDS
T10134
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129476138 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129476138 (PNLDC1)
Enzymes [BR:
ssyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129476138 (PNLDC1)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129476138 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
129476138
NCBI-ProteinID:
XP_055124757
LinkDB
All DBs
Position
2:137650066..137672328
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AA seq
531 aa
AA seq
DB search
MDVGADEFEESLPLLQELVQEADFVGLDMEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSAVEGEANKYIAHSCNFYLFPTTFGILDSEFSFQASSVQFLNQYGF
NYNKFLKNGIPYMNEEQEKKIRHDILTGNWRVRSTPDKDQIKVVIDEVTRWLDLAKEGDW
MTLPGITGFQAFEVQLVLRQALPNIWTVLKDEGVVVKKVSKQHRRYLQNTSCDRESCWKE
NILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHRLFPV
LIDTKSVTKDIWKEMNFPRVSNLSEVYEVLNSDLNPTKNSGPEIVHASRCEKYVETKCPH
EAAYDAFLCGSVLLKVAHLLLQKIHRIDPVPESSFPQYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSFRPPILILSVKRWPGVSEQQVYHKFQNLCKFDVRRLTRSQFLLLTNKFKDAR
NILKEYRGHPTLCISLYHYWRHSPNVNCLLQVCGIVTAWALLAFILGRSGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgaggagagcctccctctgctgcaggagctcgtccag
gaggccgacttcgtgggtctggacatggagttcacgggccttcgttctaacctgtctggg
ccccagcagatcagcctttttgatttgccatcggagtggtatctaaagacccgtcagagt
gttcagcaatttacaatctgtcagattggattgtctgtgttttctgctgttgaaggagag
gcaaacaagtatatagcccattcgtgtaacttctatctcttccctacaacgtttgggatt
ttggactcagaattctctttccaggcttccagtgttcagtttttgaatcagtatggcttc
aactataacaagtttctcaaaaacggaatcccatatatgaatgaagaacaggagaagaaa
attagacacgatatcctgactgggaactggagagttcgcagcactccggataaagaccaa
atcaaggtggtgattgacgaagtgacgcggtggctggacctggccaaggaaggcgactgg
atgactcttcctgggatcactggcttccaggcctttgaggtccaactggtgctgaggcag
gccctccccaacatctggacggtgctgaaagatgagggggtggtagtgaagaaagtgagt
aaacaacatcgtcggtatcttcagaacacctcttgtgaccgagagagctgttggaaggaa
aacattcttctctcagcaaggggtttttctgtctttttccaaatgctggtgaaagcccag
aagcccttagtgggacataatatgatgatggacctgctgcacctccatgagaagttcttc
agacccctcccagaaagctacgatcaatttaagcagaatatccacaggctgtttcctgtt
ctcattgataccaagagcgtaacaaaggatatctggaaggagatgaatttcccgagggtg
tcgaatctttccgaagtctatgaagtcctgaacagtgacttgaatcccaccaagaattct
ggaccagagattgttcacgcaagcaggtgtgagaaatacgttgagacaaagtgcccccac
gaagccgcgtatgatgccttcctctgtgggtcagttcttttgaaagtggcacacttgctt
ctacagaagatacaccgcatcgaccctgtgcccgagtcgtcttttcctcagtaccttgat
gtgctggctccttacgtgaaccaagtgaacctcatccgagcgggggtcccaaagatcaat
ttttctggtccagattatcccagtttccgacctcccatcctcatcctcagcgtcaaaagg
tggcctggggtcagcgagcagcaagtctaccataagtttcagaatctctgcaagtttgat
gtcaggcgactcacaagaagccagttcttactcctgaccaataagtttaaggacgcgcgg
aacatcctgaaggagtaccggggccacccgaccctgtgcatctccctgtaccactactgg
agacactccccaaacgtcaactgcctgctccaagtctgtggcatagtgactgcctgggcc
cttctcgcgttcatcctcggaagatctggtccctga
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