Symphalangus syndactylus (siamang): 129478751
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Entry
129478751 CDS
T10134
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn05014
Amyotrophic lateral sclerosis
Brite
Enzymes [BR:
ssyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129478751 (SETX)
5.6.2.5 RNA 5'-3' helicase
129478751 (SETX)
Transcription machinery [BR:
ssyn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129478751 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129478751
NCBI-ProteinID:
XP_055126578
LinkDB
All DBs
Position
3:12395968..12490061
Genome browser
AA seq
2707 aa
AA seq
DB search
MSTCCWCTPGGGSTIDFLKRYASNTSSGEFQTADEDLCYCLECVAEYHKARDELPFLHEV
LWELETLRLINHFEKSMKAEIGDDDELYIVDNNGEMPLFDITGQDFENKLRVPLLEILKY
PYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGK
VDRDDYYDLQEVLICLFKVIELGLLESPDIYTSSVLEKGKLILLPSHMYDTTNYKSYWLG
ICMLLTILEEQAMDSLLLGSDKQNDFMQLILHTMKRKAVDDSVDPFWPALHCFMVILDRL
GSKVWGQLIDPIEAFQTIIDNASYNREIQHIRNSSVRTKLEPESYSDDTVTCSQIVYNYN
PEKTKKDSGWRTAICPDYCPNMYEEMETLASVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIAGVVHHLYSEVKEVLNQTDAVCDKVTEFFLLILVSVVELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFTRSSEKSSGNCSRGTAMISSLSLHSMPSNSVQLACVQLIR
SLLKEGYQLGQQSLCKRFWDKLNLFLRGNLSLGWQLTSQETHELQTCLKQIIRNITFKAP
PCNTFVDLTSTCKTSPASYNKEESEQIGKTSRKDMHCLEASSPTFSKEPMKVQDSVLIKA
DNTIEGDDNEQNYIKDVKLEDHLSAGSCLEQSRKNIVTERAEGQIKISTRKQKSVKEISS
YIPKDCTSRNGPERGCDRGIIVSTCLLTDSSTDSLEKMSTSNEDFCLKDVALAKTSKRKT
KVQKDEICAKLSHVIKKQHRKSTLVDNVINLDENLTVSNIESFYSRKDTGVQKGDGFIHN
LSSDPSGVLDDNKNGEQKSQNNVLPKEKQLKNEELDIFSSHENNCKIQEFHVDKDLIPFT
EMTSTSEKKSSPFKDLMTVPESRDEEMSSNSTNVIYSNLIREQAPGISPKSDTLTDSQID
RDLHKLSLLAQASVITFPSNSPQNSSQLQRKVKEDKRCFTANQNNGDTSRGHVIIISDSD
DDDDDEGILSLEKLTKQDKICLEKERPEQHVSTVNSKEEKNPIKEVKTESLFQFEESDSQ
YFEFESSFEVFSVWQDHLDNNSVQDGEKKCLAPIANTTNRQGCTDYVSEVVKKGAEGIEE
HTRPQSIPVEEFCETEVKKPKRKRSEKPMAEGPVRPSSSVRNEGQSDINKRDLVGDDFNS
IDRRTSTPNSSIQRATVVSQKKSSKLCTCTEPVRKVPVSKTPKKNHSDAKKGQNRSANYL
SCRTTPAIVPPKKFRQCPEPTSTAEKLGLKKGPRKAYELSQRSLDCVAQLRDHGKTVGVV
ETRKKTKLISPQNLSVRNNKKLLTSQELQMQRQIRPKSQKNRRRLSDCESTDVTRAGSHT
AQNSDIFVPEPDRSDYNCTGGTEVLANSNRKQLIKCMPSEPETIKAKHGSPATGDACPLN
QCDSVVLNGTIPTNEVIVSTSEDPLGGGDPTAHHIELTTLKEGEPDSSSDAEEDNLFLTQ
NDPEDMDLCSQMENDNYKLIELIHGKDTVEVEEDSVSRPHLESLSGTKCKYKDCLETTKN
RSEYCPKHSEVKAADEDVFRKPGLPPSASKPLRPTTAKIFSSKSTSRIAGLSKSLETSSA
LSPSLKNKSKGIQSILKVPQPAPLIAQKPVGEMKNSCNVLHPQSPNNSNRQGCKVPFGES
KYFPSSSPVNILLSSQSVSDTFVKEVLKWKYEMFLNFGQCGPPASLCQSISRPVPVRFHN
YGDYFNVFFPLMVLNTFETVAQEWLSSPNRENFYQLQVRKFPADYIKYWEFAVYLEECEL
AKQLYPKENDLVFLAPERINEEKKDTERNDIQNLHEYHSGYVHKFRRTSVMRNGKAECYL
SIQTQENFPANLNELVNCIVISSLVTTQRKLKAMSLLGSRNQLARAILNPNPMDFCTKDL
LTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSSSVAKICLIHGPPGTGKSKTIVGLLYR
LLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKNKKNPLGNCG
DINLVRLGPEKSINNEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRA
LCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHVICCTLSTSG
GLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMK
AQEYGYDQSLMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKT
NRQTEAIRCSSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEIIKLIKDKRKDVSF
RNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSMQGSI
GFLASLQRLNVTITRAKYSLFILGHLRTLMQLLPRSFCVHVNHSPFFSPEPKYLHWALKE
NQHWNQLIQDAQKRGAIIKTCDKNYRHDAMKILKLKPVLQRSLTHPPTIAPEVSRPQGGL
PSSKLDSGFAKPSVAASLYHTPSDSKETTLTVTSKDPERPPVHDQLRDPRLLKRMGIEVK
GGIFLWDPQPSSPQHPGATPPSGEPGFPVVHQDLSHAQQPAAVVAALSNHKPPVQGEPPA
ASPEASTCQSKCDDPEEELCHRREARAFSEGEQEKCGSETHHTRRNSRWDERRLEQEDSS
SKKRKLL
NT seq
8124 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgttgttggtgtacgccaggtggtggttccaccattgacttcctaaagcgc
tatgcttccaacacttcatccggtgaatttcaaacagccgacgaagacctctgctactgc
ttggagtgtgtggctgagtaccacaaagcaagagatgaattgccattcttgcatgaggtt
ttatgggaattagaaaccttacgtctcataaatcactttgaaaaatccatgaaggcagaa
attggagatgacgatgagttatatatagtagacaacaatggagagatgccactgtttgac
atcactgggcaagactttgaaaataagcttcgagttcctcttcttgaaatactgaagtat
ccttacttgcttctacatgaacgtgttaacgagttatgtgttgaagcactttgtcggatg
gaacaagccaattgctcctttcaggtgtttgacaaacatccagggatctatttgtttttg
gtccatcccaatgaaatggttcggcgttgggctatcttgactgcaagaaacttggggaaa
gtggacagagatgattattatgacttacaagaagttttaatttgcctttttaaagtcatt
gagttggggcttttagagagtccagacatttatacttcttctgtcctagagaagggtaaa
ctgattcttctgccctcacacatgtatgatactaccaactacaaaagctattggttaggt
atttgcatgttgctgaccattcttgaggaacaagccatggattccctattgttgggctca
gacaaacaaaatgattttatgcaattgatacttcacactatgaagaggaaagcagttgat
gatagtgtggatcctttctggcccgcattacactgttttatggtgattctggatcgcctt
ggatctaaggtctggggtcaacttattgatcctattgaggcatttcaaaccattatcgac
aacgcaagctacaatagagagatccaacatatacggaacagctctgtaaggaccaagtta
gaaccggagtcctattcggatgatacggtgacttgcagccagatcgtatacaattataat
cctgaaaagaccaaaaaggattctggatggagaacagccatttgcccagattattgtcct
aacatgtatgaagaaatggaaacattagccagtgtacttcagtcagatattggtcaagac
atgcgtgttcataacagcacatttctatggttcatcccttttgtccagtccctcatggat
cttaaggatttgggtgtggcttacatagcaggggttgttcatcatctgtactctgaagtc
aaagaagtcctcaaccaaacagatgccgtgtgtgacaaagtcactgaattttttcttcta
attttggtatcagtggttgaactgcatagaaataaaaaatgtttgcatttgctgtgggtt
agttcccagcaatgggtggaagccgtcgtcaaatgtgccaagcttcctaccactgcgttt
acacggagttctgagaaatcatctggaaattgctccagaggaacagcaatgatatcatca
ctgtcgttgcattccatgccatctaactctgtacaacttgcttgtgtgcagctgattaga
agtctccttaaagaaggttatcagcttgggcagcaatctctttgcaagcgattctgggat
aagctcaacttattccttagaggaaatttatctctaggttggcagttgactagtcaggaa
acccatgagctacaaacttgtttaaagcaaattattagaaacataacattcaaagcacct
ccatgtaacacttttgtggatctgacttctacatgtaaaacctctcctgcatcttataat
aaagaagaaagtgaacaaatagggaagacatctagaaaagatatgcattgtttggaagct
tccagcccaacattttctaaagaaccaatgaaagtgcaagacagtgtattgatcaaagca
gataacactatagaaggtgacgataatgagcaaaattatataaaggatgtgaaactagaa
gaccatctctcagctgggtcatgcttagagcagagtcgtaaaaacattgttactgaaaga
gctgaaggtcaaattaaaataagtacaaggaagcagaagtctgtaaaagagatctcttca
tatataccaaaggattgtacttcaagaaatggtccagaaaggggatgtgacagaggaata
atagtatcaacatgtttgttgactgattctagcactgattctttggaaaaaatgtccaca
tcaaatgaagatttctgtttaaaggatgttgctcttgctaaaacctcaaaacgaaaaact
aaggtacagaaagatgaaatatgtgcaaagttatcacatgtaataaagaagcaacacagg
aagagtactttggtcgataatgtcatcaatttagatgaaaatttgactgtatctaacatt
gagagtttctattcaaggaaagatacaggagttcagaaaggagatggtttcatacacaat
ctttcttcagaccctagtggtgttctggatgataataagaatggagaacaaaaatctcaa
aacaatgtattgccaaaagagaaacagttaaagaatgaagagttagatattttctcttcc
catgaaaacaattgtaaaatacaggaatttcatgttgataaagatttgatcccctttaca
gaaatgaccagtacttcagagaagaaatcatctccctttaaagatcttatgactgtacct
gaatcaagagatgaggagatgagtagtaatagtaccaatgtgatttattctaacttgata
agagaacaggcccctggcatcagtcctaaatctgacaccttaacggattctcagatagac
agagaccttcacaaattatctttactagctcaagccagtgttattacatttccatccaat
tcacctcagaactcatcgcagctgcaaaggaaagtaaaagaagataaaagatgtttcaca
gctaaccaaaataatggagatacctcccgtggacatgttattattatttcagattctgat
gacgatgatgatgatgaaggaatcctgagtcttgagaaactcactaaacaggacaaaata
tgccttgagaaggaacgtccagagcagcacgtttcaacagttaatagtaaggaggaaaag
aatccaataaaggaagtaaagacagagtctctttttcagtttgaggaatctgattctcag
tattttgagtttgaaagttcatttgaagtgttttcagtttggcaagatcatctagacaat
aattcagttcaggatggtgagaaaaaatgtttggctcctatagccaataccacaaatcgt
cagggttgtacagattatgtatctgaagttgttaaaaaaggagcagagggcattgaagaa
cacacaagaccacagagtattcctgttgaggaattttgtgaaactgaagtaaaaaagcct
aagagaaaacgatctgaaaaaccaatggctgaaggtcctgtgaggccttcatcttctgtc
agaaatgagggccagtctgatattaataagagagatcttgttggagatgattttaacagt
atagatagaaggacttcaactcccaattcaagtattcagagagccactgtggtttcacag
aagaagtcttcaaagctttgtacttgtacagaacccgtcaggaaagttccagtttctaag
acccctaagaaaaatcattcagatgccaaaaaagggcagaatagaagtgcaaattaccta
agttgtagaacaactcctgctatagtgccaccaaagaaatttcgtcagtgtcctgagcca
acttcaacagctgagaaacttggcctgaaaaagggtcctcgtaaggcatatgagttgtcc
cagcgatctttggattgtgtagctcaattacgtgatcatggcaaaactgttggagtagtt
gaaacccgaaaaaagactaaattaatttctcctcaaaacctgtctgtcagaaataataag
aagctgctgactagtcaagaacttcagatgcaaaggcagatcagacccaaatcacaaaaa
aatagacgaagactttctgattgtgaaagtacagatgttacaagagcagggtcacataca
gcacagaattctgacatatttgtaccggaacctgataggtcagattataattgtacagga
ggaactgaggtactcgccaacagtaacagaaaacagttaataaaatgcatgccttctgaa
ccagaaaccataaaagcaaaacatgggtctccagcgactggtgatgcttgccctttgaac
cagtgtgattctgtagtgttaaatggaacaataccaacaaatgaagtaattgtctctact
tcagaggaccctctgggtggaggtgatccaacagcacatcatatagagctgacaactttg
aaagagggagagcctgactccagcagtgatgcagaggaagataacttatttttaacacaa
aatgatcctgaagatatggatttatgttcacaaatggagaatgacaattataaattaatt
gaactaattcatggaaaagatacagttgaggttgaagaagattctgtaagtcggcctcat
ttggaatctttgagtggcacaaagtgtaagtacaaagattgtcttgaaaccacaaaaaac
cggagtgaatactgcccaaaacactctgaagtgaaagcagcagatgaagatgtatttcgt
aaacctggcttgcctccttctgcatctaaacctttgagacctaccactgctaagattttt
agctcaaagagtacttcacgaattgctggtctttctaaatctttggaaacttcttcagca
ctttcaccatctctaaaaaataagtcaaaggggatacagtcgattttgaaagtaccacag
ccagctcccctcatagctcagaagccagtgggtgaaatgaagaattcgtgcaatgttctt
catcctcagtctccgaataattccaacaggcaaggttgcaaagttccatttggtgaaagc
aaatattttccatcttcctctccagtaaacattctcttgtcatcacagtctgtctctgac
accttcgttaaagaggtcttaaaatggaaatatgaaatgtttttgaactttggtcagtgt
gggccccctgcaagtctttgtcagtccatctcaagacctgtgcctgtcagatttcacaat
tatggagattattttaatgtttttttccctttgatggtattgaatacttttgaaacagtg
gcacaggaatggctcagctctccaaatagagagaatttctatcagttgcaagtacgaaaa
tttcctgctgattatataaaatactgggagtttgcagtttatctggaagaatgtgaactg
gctaaacagctttatccaaaggaaaacgatttggtgtttttagctcctgagagaataaat
gaagagaagaaagatacagagagaaatgacatacaaaatctccatgaatatcattctggt
tatgttcataaatttcgccgcacttcagtcatgcgtaatgggaaagctgagtgttacctt
tccatccagactcaagagaacttcccggccaatttaaacgaacttgtgaattgtatcgta
atcagttctctggtaactacacaaaggaagttgaaagccatgtctctgttgggtagtcgg
aaccaactggctagagctattctgaatccaaaccctatggacttctgtacaaaagattta
ctaactacaacatctgagagaattatcgcgtacttaagagatttcaatgaagaccaaaag
aaagcaatagaaactgcatatgctatggtgaaacactcatcatcagttgccaaaatctgc
ttgattcatggaccacctggaacaggaaaatcaaaaactattgttggcctcctctatcgt
ctactgacagagaaccagaggaaggggcattcagatgaaaactccaatgccaaaatcaaa
caaaaccgtgtcctcgtgtgtgcaccttccaatgcagctgttgatgaactcatgaaaaaa
attatccttgaattcaaagaaaaatgtaaaaacaagaagaatcctttaggaaactgtgga
gatataaatttggtacgactgggtccagaaaagtctattaataatgaggttctaaagttc
agtttggacagccaagtaaaccacagaatgaaaaaagagttaccttctcatgttcaggcg
atgcataaaagaaaggaatttctagattatcagttggatgagctttcccggcagcgagct
ctatgccgaggtggacgggaaatacagaggcaagaattagatgaaaacatttccaaagtt
tctaaggaaaggcaggaacttgcttctaaaattaaagaggttcaaggacgtccacagaaa
acacagagtatcatcatcttagagtcccatgtcatctgctgcacattgagcacaagtggt
ggtttactacttgagtctgctttccgtgggcaagggggagtccccttcagctgtgtcatt
gttgatgaggctggacagtcttgtgaaattgagactctcactccactcatccatcgctgc
aacaagctcatcctagtaggagatcctaagcagctccctcccacagtcatctctatgaaa
gcacaggagtatggctacgaccagtcactgatggctcgcttctgcagactgctggaagag
aatgtagaacacaacatgatcagcaggctgcccattctacagctcactgttcagtacagg
atgcatccggacatatgcctcttcccttctaattatgtttataacagaaacttaaaaaca
aatagacagacagaagccattcgatgttcatcagactggccatttcagccataccttgtg
tttgatgtcggggatggttcagaaagacgggataatgactcgtatataaatgttcaagaa
ataaaactggtgatggaaataattaagcttattaaagacaaaagaaaggatgttagtttt
cgaaacattggcataataacgcattacaaggcccagaagacgatgattcagaaggatttg
gacaaagagttcgatagaaaaggaccagcagaagtagatactgtggatgcattccagggt
cggcagaaggattgtgttattgttacatgtgtcagagcaaatagcatgcaaggttcaatt
ggattcctggcaagtttgcagagattgaatgtcaccatcacacgagccaagtacagcctc
ttcatccttggacatttgaggaccctgatgcaacttcttcctaggagcttttgtgtacac
gtgaaccattcgccttttttcagcccagaacccaagtatctacactgggctctcaaggaa
aaccagcattggaatcagctgattcaggatgctcagaagcgtggtgccattattaagacc
tgtgacaaaaactatagacatgatgcaatgaagattctgaaactcaagcctgtgctgcag
agaagtctcactcaccctcccaccatagccccagaggtgtccagaccccagggtggtttg
cccagcagcaagctagacagtggatttgccaagccatctgtggctgcttctctataccac
acaccctctgactccaaggaaactactcttactgttacttcaaaggaccctgaaagacct
cctgttcatgaccaacttcgggacccacggctgctgaagaggatgggcattgaggtcaaa
ggaggaatattcctatgggatccacaaccctcgagcccccagcatcctggagcaacacct
ccttcaggcgagccgggcttccctgtcgttcaccaggacctgagccatgcacagcagccc
gctgctgtagtggctgctctgagcaaccacaaacctcccgtgcagggcgaacctccagct
gccagtcccgaggcttccacgtgtcagagcaaatgtgatgacccggaagaggagctctgt
cacaggagagaggccagggctttcagtgaaggggagcaggagaagtgtggttccgagacc
catcacaccaggaggaactctaggtgggacgagaggagactggagcaggaggacagcagt
tccaagaaaagaaagcttttatag
DBGET
integrated database retrieval system
