Symphalangus syndactylus (siamang): 129478796
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Entry
129478796 CDS
T10134
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X3
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129478796 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyn03019
]
129478796 (PATL1)
Messenger RNA biogenesis [BR:
ssyn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129478796 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
129478796 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
129478796
NCBI-ProteinID:
XP_055126779
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All DBs
Position
1:complement(87997527..88043719)
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AA seq
745 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQSQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCGV
PLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQ
QHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRNQHRNLNGAGDRGSHRS
SHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEIQ
GDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDET
KEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDERKHKICSMYDNLR
GKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLAFLIKKDAQD
EVLPCLLSPFSLLLYHLPSVTITSLLQQLMNLPQSAATPAPSNPHLTAVLQNKFGLSLLL
ILLSRGEDLQSSDPATESTQNNQWSVWTVSSLILSSLRESWNQFPMDTEGQMYVCDSNYK
TFWKRHNYEDSRKITGCQELRKKEE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctggatgaagatgaagatgcgtttcag
ggactgggagaagaagatgaagagattgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcttggctgaactggaagaaaagcta
ccagtggcagttaatgaacaaacaggcaatggagagagagatgaaatggacttgttgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaactagaa
gatccagctatcatgagggcagtgcagaccaggccagttttacaatcccaaccaggaagt
ctgaattccagtatctgggatggatctgaagttctgaggcgaattcgaggaccactgctt
gctcaggaaatgcctacagtgtctgtattagaatatgctttgcctcagaggcccccccag
ggtccagaagatgatcgggacctttctgaacgtgcattaccaaggcggtcaacttcacct
atcattggcagtcctcctgttagagctgtccccataggcaccccacctaaacagatggct
gtacccagcttcacccaacagattctgtgtccgaagcctgtccatgttcggcctccaatg
ccacctcgttatcctgctccctatggtgagaggatgtctccaaaccagctctgcggtgtc
ccgctacagcctggacggatgtctcccagccagtttgcacgggtccctggatttgttggt
agtccacttgctgccatgaatcccaagttgctacaagggcgagttgggcagatgcttccc
ccagcaccaggcttccgtgccttctttagtgctccaccctccgctacaccacctccacag
cagcaccctcctggtccaggaccccacctgcaaaacctaagatctcaggccccaatgttt
agaccggacacaactcaccttcatccacagcaccgtcgactcttgcatcagagacagcaa
cagaatagaaatcagcatcggaatctcaatggtgccggagatagaggaagtcaccggagc
agtcatcaagatcatctccgaaaggatccgtatgctaatctcatgttgcagcgggaaaag
gattgggtctctaaaatccagatgatgcaactgcaaagcactgatccctacctggatgat
ttttattaccagaattactttgaaaaactggagaaactgtcagctgctgaagaaatacaa
ggtgatggccctaagaaggagcgcaccaagcttatcacccctcaggtggccaaactggag
cacgcctataagccagtgcaatttgaggggtctttgggaaagcttaccgtttctagtgtg
aataatccccgaaaaatgattgatgctgttgtgacatctcggagtgaggatgatgagaca
aaagaaaaacaagttcgagacaagaggagaaaaacccttgttataattgagaaaacgtac
agcttactccttgacgtggaggactatgaaagacgttatctcctaagtctggaagaagag
cgacctgccctaatggatgagagaaagcacaaaatttgtagcatgtatgacaacttaagg
gggaaattgcctggacaagagagacctagtgatgaccactttgtacagatcatgtgtatc
cgaaaagggaagagaatggttgcccgtattcttcctttcctctccacagagcaagcagct
gacattctcatgacaacagccaggaacctcgctttcctcatcaagaaggatgcacaagat
gaggtgctgccatgcttactgagtcccttctctctcctcctctatcatcttccatcagtg
actatcaccagccttttgcaacagctaatgaacctacctcaaagtgcagctacaccagca
ccctccaatcctcacctcactgctgtgctccagaacaagtttggcctgtcactgctcctc
atcctcctgagccgtggtgaagacctacagagttcagaccctgccacagaatcaacgcaa
aataatcagtggtcagtgtggactgtttcttctcttattttaagttctttgagagaatct
tggaaccaattccccatggatactgaaggacaaatgtatgtgtgtgattcaaactataag
acattctggaaaaggcataactatgaagacagtagaaagatcactggttgccaagagtta
aggaaaaaggaagaatga
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