Symphalangus syndactylus (siamang): 129479026
Help
Entry
129479026 CDS
T10134
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
ssyn Symphalangus syndactylus (siamang)
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssyn03036
]
129479026 (SHOC1)
Chromosome and associated proteins [BR:
ssyn03036
]
Eukaryotic type
Meiosis-specific proteins
Others
129479026 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
129479026
NCBI-ProteinID:
XP_055127472
LinkDB
All DBs
Position
3:33183994..33292875
Genome browser
AA seq
1508 aa
AA seq
DB search
MFSALKYHAIDYLYENVVRKKFYRNALLLRIPSCLYQDESYHVADTDNKFRRPWTRVSAV
SVPGMTDTSVLDRWKASFFVEDFLEKKTVTRMVTQINCEFEEVVPSSNPDSQIEVEEVSL
YTHMDYNEVFTPVSCLEKCSALQNQNQDLFIDDKGILFVSNRKHLPTLPTLLSRLKLFLV
KDPLLDFKGQIFTEANFSRECFSLQETLEAFAKEDFCMDKVNFCQEKLEDTICLNEPSSF
LIEYEFLIPPSLKPEIDIPSLSELKELLNLVPEIINYADENEKLFEKDLTNKHGIEDIGD
IKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNSLCTELQTFPLSPVCKI
NLLTAEESANKYYMMWQLERCRSPLNPFLLTVPRLQEPHCQYSVTDLKKIFSVKEESLVI
NPEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSH
SSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYLSDKRAAKEEKPKNDQESVNRI
IQKKENNDHFELDCTGPSIKSPSSSIIKKASFEHGKKQENDLDPLSDFIMLRNKYKTCTS
KTEVTNSDEKHDKEACSLTLQEESPIVHINKTLEEINQERGTDNVIEIQASDSQCQAFCL
LEAAASPILKNLVSFCILPTANWKFATVIFDQTRFLLKEQEKVVSDAVHQGTIDEREMTF
RHAAVLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQLEIVQFIRGKK
PETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHLLIKILNKIEGLTLTVLHSNE
RKGFLESEGVLKGTSSCVVVHNQYIGADFPWSKFSFVVEYNYVEDSCWTKHCKELNIPYT
AFKVILPDTVLERSTLLDRFGGFLLEIRIPYVFFASEGLLNTPDILQLLESNYNISLVER
GCSESLKLFGSSERYVVVTIDEHTAIILQDLEELNCEKASDNIIMRLMALSLQYRYCWII
LYTKETLNSEYPLTEKTLHHLALIYAASVSFGLNSEELDVKLIIAPGVEATALIIRQIAD
HNLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLC
QLQELLPEVPEKVLKHFCSITSLFKISSSSITKSPQISSPQENRNQISTLSSQSSASDLD
AVIQEHNEYYQYLGLGETVQEDKTTTSNDNSSIMELKEISSFLPSVTSYNQTSYWKDSSC
KPNIGQNTPFLINTESMRPAYNSFLNHSDSELDVFSLGLTQMNCETIKSPIDTQKRVSVV
PRFINSRKRRTHEAKGFINKDVSDPIFSLEGTQSPLLWNFKKNVWEQENHPFNLQYGAEQ
TTCNELFSQKGNLFTDQQKCLSDESEGLTCESSNDETFWRELPSVPSLNLFRASDSNANP
EEFNSLYFYQRAGKSLGQKRQPESSFNSGDKESLTGFMYSQLPQFKKRRLAYEKVPGRVD
GQTRLRFF
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattgaaatatcatgcaatagactatttatatgagaatgtggttagaaag
aagttttacagaaatgctttattgcttcgaatcccttcatgtttatatcaagatgaaagt
taccatgtagcagatactgataataaatttaggaggccatggacaagagtctcagctgtt
tcagttccgggaatgacagatacctcagtcttggaccgatggaaagcaagtttctttgtg
gaggatttccttgagaaaaaaacagttacaagaatggtgacccagattaattgtgaattt
gaggaagttgttccaagttcaaatccagactcccaaattgaagtagaggaggtcagttta
tacacccacatggactacaatgaagtctttacccctgtcagttgtttagaaaaatgttca
gcacttcaaaaccagaaccaagatttatttattgatgataaaggaatactttttgtaagt
aatagaaaacacctaccaactttgcctactctcttgagtagactaaaactgtttttggta
aaggatcctcttttggatttcaaaggacagatcttcacagaagctaatttttccagggaa
tgtttctctcttcaagaaactttggaagcttttgcaaaagaagatttttgtatggataaa
gtgaacttttgtcaagagaaactagaagatacaatatgtttaaatgagccgtcaagtttt
cttattgagtatgaattcttaatacctccaagcctcaaaccagaaattgatattccatca
ctctcagaactgaaggagttattaaacctagtgccagaaataataaactatgcagatgaa
aatgaaaagctttttgaaaaagatcttactaacaagcatggaattgaggatatcggggat
ataaaattcagctccacagagattttgaccattcaaagccagagtgaaccagaagagtgc
agtaaaccaggagagttagaaatgccactaactcctctgttcctaacatgccaacattct
tcagtgaattcattatgtacagaacttcagacatttccattatctccggtttgtaaaatt
aatttgcttactgctgaagaatcagctaataaatactacatgatgtggcaattagaaaga
tgtagaagccctttgaacccatttttgcttacagtgccaagacttcaagagccccactgc
caatattcagttacagatttgaaaaagatattttctgttaaagaagaaagccttgtgatt
aatccagaaaaggcagagtggtggaaacaagcaggactaaatctgaaaatgatggaaaca
ttggaacatctgaatacatatttatgtcatgataatttgtcttctaatgacactaaaatt
gagatatttttgcctacgaaagtgcttcaattagaatcatgtctagaacataaaagtcat
tcttcacctattgcacttattgatgaaaaatctacaaatgctcatttatcacttccacaa
aagagtccatctctggcaaaagaagtaccagatctatgtttttctgatgactatttatct
gataaaagagcagcaaaagaagaaaaaccaaagaatgaccaagaatcagtaaacagaata
atccaaaagaaagaaaataacgatcactttgaacttgactgtacaggaccatctattaaa
tcaccttcctcttcaataattaaaaaagcatcttttgaacatggtaaaaaacaagagaat
gatttggaccctttgagcgactttattatgctgcgaaataaatataagacttgtacctca
aagactgaagtcacaaacagtgatgaaaaacatgataaagaagcatgttctttgacactt
caagaagaaagtcctattgttcatattaataaaaccctggaggaaataaatcaggaaagg
ggaacagataatgtcattgaaattcaagcatcagatagccagtgccaagcattttgcctc
ctcgaagcagcagcttctcctatcttaaaaaaccttgtatccttctgtattctcccaact
gctaattggaaatttgccactgttatttttgaccaaacaaggtttctcttaaaggaacaa
gaaaaagtagtaagtgatgctgttcaccaaggtacaatcgatgaaagagaaatgactttc
aggcatgccgctgtcttacatcttctggtaacaattagagatgtccttttaacatgcagc
ttggacacagcattgggatatttgtcaaaggcaaaggatatctacaatagcattttaggc
ccctatttgggtgacatttggagacagctggagattgtacagtttattagggggaaaaag
cctgaaaccaactacaagatacaagaattgcaatgtcagatactaagttggatgcaaagt
caacagcaaattaaggtactgattataataagaatggactcagatggtgaaaaacattta
ctcattaaaattcttaacaaaatagaaggtttaacactgactgtccttcattcaaatgaa
agaaaaggttttctggaatctgaaggtgttttaaagggtacaagttcctgtgtagttgta
cataatcaatatattggagcagatttcccatggagtaagttctcatttgtggtggaatac
aattatgtggaagactcttgttggactaaacactgcaaagagttgaatattccttacact
gcctttaaagtgattcttccagacacagttttagaaagaagcaccttgctggatagattt
ggaggttttcttttggaaattcggattccatatgtgttttttgcatctgaaggacttctt
aatactccagacatacttcagctgctagaatccaactataacatctcactagtagagaga
ggctgcagtgagtcattgaaactctttggaagttcagagcgttatgtagtggtgacaatt
gatgaacacactgccataattttgcaggatctagaagaattgaactgtgagaaggcatca
gacaatatcattatgaggctgatggcattatcattacagtacagatattgttggataatt
ttatataccaaagaaacattaaattcagagtatccgcttacagaaaagacacttcatcac
ctagcactgatttatgcagcttcggtttcatttgggctaaactctgaagaactggatgta
aagcttataattgccccaggagtagaagcaactgccttgataattcgacaaattgctgac
cacaatttaatgacctcaaagagagatcctcatgaatggctggataaatcctggcttaaa
gtttcaccatctgaggaagaaatgtacttacttgattttccatgtattaacccattggtg
gctcagcttatgctaaataaaggaccttcactgcattggatattattagcaactctgtgt
caacttcaggaactcctacctgaagtcccagaaaaagtgttaaagcatttttgtagcatc
acttccctattcaagattagttcttcttccataacaaaatcaccgcaaatttcgtcacct
caggaaaataggaatcagattagtaccttgtcttctcagagttcagcttctgatttagac
gctgtcattcaagaacataatgaatattatcagtatttaggattaggagagacagtgcag
gaagacaaaaccaccacttcgaatgacaactcttccattatggaactaaaagaaatctca
agttttttaccatctgtgacttcatacaatcagaccagctactggaaagactccagctgt
aaacctaatattgggcagaatactccttttctaattaatacagaatcaatgagaccggct
tataactcctttctaaaccacagtgattcggagttagatgtcttttctttgggtctaaca
caaatgaactgtgaaactataaaatcaccaattgacactcagaagagagtgtcagttgtt
ccccgttttataaattctcggaaaaggagaacacatgaagcaaaaggtttcataaataaa
gatgtatcggaccctatcttttcactagagggcactcaatctcctcttctttggaacttt
aagaaaaatgtatgggaacaagagaatcacccgttcaacttacaatatggtgcagagcag
actacatgtaacgaattgttctctcagaaaggtaatttattcactgatcagcaaaaatgt
ctatcagatgagtctgaaggcctcacatgtgaaagttcaaatgatgagactttctggaga
gaattaccatctgtccccagtttgaatttatttcgtgcttctgattctaatgcaaatcca
gaagaattcaacagcctttatttctaccaaagagctggaaaaagtttaggacagaaaagg
caacctgaatcttcatttaactcaggagacaaggaatcattaacaggttttatgtactca
caactaccacaattcaaaaaacgacgtctagcatatgaaaaagtccctggtagagttgat
gggcagactcggctgaggtttttttga
DBGET
integrated database retrieval system
