KEGG   Symphalangus syndactylus (siamang): 129480115
Entry
129480115         CDS       T10134                                 
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1 isoform X3
  KO
K11757  protein polybromo-1
Organism
ssyn  Symphalangus syndactylus (siamang)
Pathway
ssyn03082  ATP-dependent chromatin remodeling
ssyn05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:ssyn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129480115 (PBRM1)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    129480115 (PBRM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssyn03021]
    129480115 (PBRM1)
   03036 Chromosome and associated proteins [BR:ssyn03036]
    129480115 (PBRM1)
Transcription machinery [BR:ssyn03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     129480115 (PBRM1)
Chromosome and associated proteins [BR:ssyn03036]
 Eukaryotic type
  Chromatin remodeling factors
   PBAF complex
    129480115 (PBRM1)
SSDB
Motif
Pfam: Bromodomain BAH HMG_box HMG_box_2 HMG_WDHD1
Other DBs
NCBI-GeneID: 129480115
NCBI-ProteinID: XP_055129871
LinkDB
Position
1:108281352..108424032
AA seq 1704 aa
MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDY
KDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF
NNAKAYYKPDSPEYKAACKLWDLYLRTRNEFVQKGEADDEDDDEDGQDNQGTVTEGSSPT
YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNG
SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMAKSSLRMR
TPSNLAAARLTGPSHSKGSLGEERNPTSKYYRNKRAVQGGRLSAITMALQYGSESEEDAA
LAAARYEEGESEAESITSFMDVSNPFYQLYDTVRSCRNNQGQLIAEPFFHLPSKKKYPDY
YQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVM
QAKKKELARRDDIEDGDSMISSATSDTGSAKRKRNTHDSEMLGLRRLSSKKNIRKQRMKI
LFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEG
MIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPKLKLSRKS
GISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMD
MEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG
DEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDII
RKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEI
LLSPALSYTTKHLHNDVEKEKKEKLPKEIEEDKLKREEEKREAEKSEDSSGAAGLSGLHR
TYSQDCSFKNSMYHVGDYVYVEPAEVNLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETF
HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSA
KTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANADKGDDEKNTDNSEDSRAEDNF
NLEKEKEDVPVEMSNGEPGCHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVR
DGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCR
PTEIPENDILLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLL
EKKIQLLEAKFAELEGGDDDIEEMGEEDSEVIEPPSLPQLQTPLASELDLMPYTPPQSTP
KSAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKK
AEYEERAAKVAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLNQQLTPVAG
MMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAP
MVGTPAPGGSPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKTQRLL
HSEAYLKYIEGLSAESNSISKWDQTLAARRRDIHLSKEQESRLPSHWLKSKGAHTTMADA
LWRLRDLMLRDTLNIRQAYNLENV
NT seq 5115 nt   +upstreamnt  +downstreamnt
atgggttccaagagaagaagagctacctccccttccagcagtgtcagcggggactttgat
gatgggcaccattctgtgtcaacaccaggcccaagcaggaaaaggaggagactttccaat
cttccaactgtagatcctattgccgtgtgccatgaactctataataccatccgagactat
aaggatgaacagggcagacttctctgcgagctcttcattagggcaccaaagcgaagaaat
caaccagactattatgaagtggtttctcagcccattgacttgatgaaaatacaacagaaa
ctaaaaatggaagagtatgatgatgttaatttgctgactgctgacttccagcttcttttt
aacaatgcaaaggcctattataagccagattctcctgaatataaagccgcttgcaaactc
tgggatttgtaccttcgaacaagaaatgagtttgttcagaaaggagaagcagatgacgaa
gatgatgatgaagatgggcaagacaatcagggcacagtgactgaaggatcttctccaact
tacttgaaggagatcctggagcagcttcttgaagccatagttgtagctacaaatccatca
ggacgtctcattagcgaactttttcagaaactgccttctaaagtgcaatatccagattat
tatgcaataattaaggagcctatagatctcaagaccattgcccagaggatacagaatgga
agctacaaaagtattcatgcaatggccaaagatatagatctcctcgcaaaaaatgccaaa
acgtataatgagcctggctctcaagtattcaaggatgcaaattcaattaaaaaaatattt
tatatgaaaaaggctgaaattgaacatcatgaaatggccaagtcaagtcttcgaatgagg
actccatccaacttggctgcagccagactgacaggtccttcacacagtaaaggcagcctt
ggtgaagagagaaatcccactagcaagtattaccgtaataaaagagcagtacaaggaggt
cgtttatcagcaattacaatggcacttcagtatggctcagaaagtgaagaagatgctgct
ttagctgctgcacgttatgaagagggagagtcagaagcagaaagcatcacttcctttatg
gatgtttcaaatcctttttatcagctttatgacacagttaggagttgtcggaataaccaa
gggcagctaatagctgaaccttttttccatttgccttcaaagaaaaaataccctgattat
taccagcaaattaaaatgcccatatcactacaacagatccgaacaaagctgaagaatcaa
gaatatgaaactttagatcatttggagtgtgatctgaatttaatgtttgaaaatgccaaa
cgctataatgtgcccaattcagccatctacaagcgagttctaaaattgcagcaagttatg
caggcaaagaagaaagagcttgccaggagagacgatatcgaggacggagacagcatgatc
tcttcagccacctctgatactggtagtgccaaaagaaaaaggaacactcatgacagtgag
atgttgggtctcaggaggctatccagtaaaaagaacataagaaagcagcgaatgaaaatc
ttattcaatgttgttcttgaagctcgagagccaggttcaggcagaagactttgtgaccta
tttatggttaaaccatccaaaaaggactatcctgattattataaaatcatcttggagcca
atggacttgaaaataattgagcataacatccgcaatgacaaatatgccggtgaagaggga
atgatagaagacatgaagctgatgttccggaatgccaggcactataacgaggagggctcc
caggtatacaatgatgcacatatcctggagaagttactcaaggagaaaaggaaagagctg
ggcccactgcctgatgatgatgacatggcttctcccaaactcaagctgagtaggaagagt
ggcatttctcctaaaaaatcaaaatacatgactccaatgcagcagaaactaaatgaggtc
tatgaagctgtaaagaactatactgataagaggggtcgccgcctcagtgccatatttctg
aggcttccctctagatctgagttgcctgactactatctgactattaaaaagcccatggac
atggaaaaaattcgaagtcacatgatggccaacaagtaccaagatattgactctatggtt
gaggactttgtcatgatgtttaataatgcctgtacatacaatgagcctgagtctttgatc
tacaaagatgctcttgttctacacaaagtcctgcttgaaacacgcagagacctggaggga
gatgaggactctcatgtcccaaatgtgactttgctgattcaagagcttatccacaatctt
tttgtgtcagtcatgagtcatcaggatgatgagggaagatgctacagtgattctttagca
gaaattcctgctgtggatcccaactttcctaacaaaccaccccttacatttgacataatt
aggaagaatgttgaaaataatcgctaccggcggcttgatttatttcaagagcatatgttt
gaagtattggaacgagcaagaaggatgaatcggacagattcagaaatatatgaagatgcg
gtagaacttcagcagttttttattaaaattcgtgatgaactctgcaaaaatggagagatt
cttctttcaccggcactcagctataccacaaaacatttgcataatgatgtggagaaagag
aaaaaggaaaaattgccaaaagaaatagaggaagataaactaaaacgagaagaagaaaaa
agagaagctgaaaagagtgaagattcctctggtgctgcaggcctctcaggcttacatcgc
acatatagccaggactgtagctttaaaaacagcatgtaccatgttggagattacgtctat
gtggaacctgcagaggtcaacctacaaccacatatagtctgtattgaaagactgtgggag
gattcagctggtgaaaaatggttgtatggctgttggttttaccgaccaaatgaaacattc
cacctggctacacgaaaatttctagaaaaagaagtttttaagagtgactattacaacaaa
gttccagttagtaaaattctaggcaagtgtgtggtcatgtttgtcaaggaatactttaag
ttatgcccagaaaacttccgagatgaggatgtttttgtctgtgaatcacggtattctgcc
aaaaccaaatcttttaagaaaattaaactgtggacgatgcccatcagctcagttaggttt
gtccctcgggatgtgcctctgcctgtggttcgcgtggcctctgtatttgcaaatgcagat
aaaggtgatgatgagaagaatacagacaactcagaggacagtcgagctgaagacaatttt
aacttggaaaaggaaaaagaagatgtccctgtggaaatgtccaatggtgaaccaggttgc
cactactttgagcagctccattacaatgacatgtggctgaaggttggcgactgtgtcttc
atcaagtcccatggcctggtgcgtcctcgtgtgggcagaattgaaaaagtatgggttcga
gatggagctgcatatttttatggccccatcttcattcacccagaagaaacggagcatgag
cccacaaaaatgttctacaaaaaagaagtatttctgagtaatctggaagaaacctgcccc
atgacatgtattctcggaaagtgtgctgtgttgtcattcaaggacttcctctcctgcagg
ccaactgaaataccagaaaatgacattctgctttgtgagagccgctacaatgagagcgac
aagcagatgaagaaatttaaaggattgaagaggttttcactctctgctaaagtggtagat
gatgaaatttactacttcaggaaaccaattgttcctcagaaggagccgtcacctttgttg
gaaaagaagatccagttgctagaagctaaatttgccgagttagaaggtggagatgatgat
attgaagagatgggagaagaagatagtgaggtcattgaacctccttctctacctcagctt
cagacccccctggccagtgagctggacctcatgccctacacacccccacagtctacccca
aagtctgccaaaggcagtgcaaagaaggaaggctccaaacgtaaaatcaacatgagtggc
tacatcctgttcagcagtgagatgagggctgtgattaaggcccaacacccagactactct
ttcggggagctcagtcgcctggtggggacagaatggagaaatcttgagacagccaagaaa
gcagaatatgaagagcgggcagctaaagttgctgagcagcaggagagagagcgagcagca
cagcaacagcagccgagtgcttctccccgagcaggcacccctgtgggggctctcatgggg
gtggtgccaccaccaacaccaatggggatgctcaatcagcagttgacacctgttgcaggc
atgatgggtggctatccgccaggccttccacctttgcagggcccagttgatggccttgtt
agcatgggcagcatgcagccacttcaccctggggggcctccaccccaccatcttccacca
ggtgtgcctggcctcccgggcatcccaccaccgggtgtgatgaaccaaggagtggcccct
atggtagggactccagcaccaggtggaagtccatatggacaacaggtgggagttttgggg
cctccagggcagcaggcaccacctccatatcccggcccacatccagctggaccccctgtc
atacagcagccaacaacacccatgtttgtagctcccccaccaaagacccagcggcttctt
cactcagaggcctacctgaaatacattgaaggactcagtgctgagtccaacagtattagc
aaatgggatcagacactggcagctcgaagacgcgacatccatttgtcaaaagaacaggag
agccgcctaccctctcactggctgaaaagcaaaggggcccacaccaccatggcagatgcc
ctctggcgccttcgagatttgatgctccgggacaccctcaacattcgccaagcatacaac
ctagaaaatgtttaa

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