Symphalangus syndactylus (siamang): 129484226
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Entry
129484226 CDS
T10134
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1 isoform X2
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn04068
FoxO signaling pathway
ssyn05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
129484226 (RAG1)
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
129484226 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssyn04121
]
129484226 (RAG1)
Enzymes [BR:
ssyn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129484226 (RAG1)
Ubiquitin system [BR:
ssyn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129484226 (RAG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1
RAG1_DNA-bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_10
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
129484226
NCBI-ProteinID:
XP_055137860
LinkDB
All DBs
Position
6:complement(19743775..19827378)
Genome browser
AA seq
1043 aa
AA seq
DB search
MAASFPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTAEEAEKEKKDSFEGKPSLE
QSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNGKARGKAIHQANLRHLCRICGNSFKT
DEHNRRYPVHGPVDGKTLGLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
SIMYRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARRGLKRTSIQPNLQLSKKLKTVL
DQARQARQCKRRAQARISSKDVMKKIANCSKIHLSTKLLAVDFPEHFVKSISCQICEHIL
ADPVETNCKHVFCRVCILRCLRVMGSYCPSCRYPCFPTDLESPVKSFLSVLNSLMVKCPA
KECNEEVSLEKYNHHISSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKSVCMTLFLLALRARNEHRQADELEAIMQGKGSGLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHHFEWQPPLKNVSSSTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKE
SCDGMGDVSEKHGSGPVVPEKAVRFSFTIMKITIAHSSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSELMLELGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
RKKMNLKPIMRMNGNFARKLMTKETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTMN
SQASLGDPLGMEDSLESQDSMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctctttcccacccactttgggactcagttctgccccagatgaaattcagcac
ccacatattaaattttcagaatggaaatttaagctgttccgggtgagatcctttgaaaag
acagctgaagaagctgaaaaggaaaagaaggattcctttgaggggaaaccctctctggag
caatctccagcagtcctggacaaggctgatggtcagaagccagtcccaactcagccattg
ttaaaagcccaccctaagttttcaaagaaatttcacgacaatgggaaagcaagaggcaaa
gcgatccatcaagccaaccttcgacatctctgccgcatctgtgggaattcttttaaaact
gatgagcacaacaggagatatccagtccatggtcctgtggatggtaaaaccctaggactt
ttacgaaagaaggaaaagagagctacttcctggccggacctcattgccaaggttttccgg
atcgatgtgaaggcagatgttgactcgatccaccccactgagttctgccataactgctgg
agcatcatgtacaggaagtttagcagtgccccatgtgaggtttacttcccaaggaacgtg
accatggagtggcacccccacacaccatcctgtgacatctgcaacactgcccgtcgggga
ctcaagagaacgagtattcagccaaacttgcagctcagcaaaaaactcaaaactgtgctt
gaccaagcgagacaagcccgtcagtgcaagagaagagctcaggcaaggatcagcagcaag
gatgtcatgaagaagatcgccaactgcagtaagatacatcttagtaccaagcttcttgca
gtggacttcccggagcactttgtgaaatccatctcctgccagatctgtgaacacattctg
gctgaccctgtggagaccaactgtaagcatgtcttttgccgggtctgcattctcagatgc
ctcagagtcatgggcagctattgtccctcttgccgatatccatgcttccctactgacctg
gagagtccagtgaagtcctttctgagcgtcttgaattccctgatggtgaaatgtccagca
aaagagtgcaatgaggaggtcagtttggaaaaatataatcaccacatctcaagtcacaag
gaatcaaaagagacttttgtgcacattaataaagggggccggccccgccaacatcttctg
tcgctgactcggagagctcagaagcaccggctgagggagctcaagctgcaagtcaaagcc
tttgctgacaaagaagaaggtggagatgtgaagtccgtgtgcatgaccttgttcctgctg
gctctgagggcaaggaatgagcacaggcaagccgatgagctggaggccatcatgcaggga
aagggctctggcctgcagccagctgtttgcttggccatccgtgtcaacaccttcctcagc
tgcagtcagtaccacaagatgtacaggactgtgaaagccatcacagggagacagattttt
cagcctttgcatgcccttcggaatgctgagaaggtacttctgccaggctaccaccacttt
gagtggcagccacctctgaagaatgtgtcttccagcactgatgttggcattattgatggg
ctgtctggactatcatcctctgtggatgattacccagtggacaccattgcaaagaggttc
cgctatgattcagctttggtgtctgctttgatggacatggaagaagacatcttggaaggc
atgagatcccaagaccttgatgattacctgaatggccccttcactgtggtggtgaaggag
tcttgtgatggaatgggagatgtgagtgagaagcatgggagtgggccagtagttccagaa
aaggcagtccgtttttcattcacaatcatgaaaattactattgcccacagctctcagaat
gtgaaagtatttgaagaagccaaacctaactctgaactgtgttgcaagccattgtgcctt
atgctggcagatgagtctgaccacgagaccctgactgccatcctgagccctctcattgct
gagagggaggccatgaagagcagtgaattaatgcttgagctgggaggcattctccggact
ttcaagttcatcttcaggggcaccggctatgatgaaaaacttgtgcgggaagtggaaggc
ctcgaggcttccggctcagtctacatttgtactctttgtgatgccacccgtctggaagcc
tctcaaaatcttgtcttccactctataaccagaagccatgctgagaacctggaacgttat
gaggtctggcgttccaacccttaccacgagtctgtggaagaactgcgggatcgggtgaaa
ggagtctcagccaaacctttcattgagacagtcccttccatagacgcactccattgtgac
attggcaatgcagctgagttctacaagatcttccagctagagataggggaagtgtacaag
aatcccaatgcttccaaagaggaaaggaaaaggtggcaggccacactggacaagcatctc
cggaagaagatgaacctcaaaccaatcatgaggatgaatggcaactttgccaggaagctc
atgaccaaagagactgtggatgcagtttgtgagttaattccttctgaggagaggcacgag
gctctgagggagctgatggatctttacctgaagatgaaaccagtatggcggtcatcatgc
cctgctaaagagtgcccagaatccctctgccagtacagtttcaattcacagcgttttgct
gagctcctttctaccaagttcaagtataggtatgagggaaaaatcaccaattattttcac
aaaaccttggcacatgttcctgaaattatcgagagggatggctccattggggcatgggca
agtgagggaaatgagtctggtaacaaactgtttaggcgcttccggaaaatgaatgccagg
cagtccaaatgctacgagatggaagatgtcctgaaacaccactggctgtacacctccaaa
tacctccagaagtttatgaatgctcataatgcattaaaaacctctgggtttaccatgaac
tctcaggcaagcttaggggacccattaggcatggaggactctctggaaagccaagattca
atggaattttaa
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